Lukas,
The Mac build does not support openmp. This is because the initial
version of gcc we were using for the Mac build did not support it. We
are now using a version of gcc for the Mac build which does support
oppenmp so the current plan is that any subsequent releases of
freesurfer will
Hi Zeke!Thanks a lot for the response. Better a late response than none :o)!
Do you have any vague estimate when a new release will be available?
So far I did not try to compile it from the sources, because it is not my
daily business and for an inexperienced it most likely ends up with pure
I do not have any information to give in regards to when a new release
would be available. Compiling freesurfer from source is not exactly
something I would call fun. That said, I have been working on a brief
how-to-guide on how to build freesurfer on Mac OSX and I have already
packaged the
And fun, right?
On May 5, 2014, at 5:48 PM, Z K zkauf...@nmr.mgh.harvard.edu wrote:
I do not have any information to give in regards to when a new release
would be available. Compiling freesurfer from source is not exactly
something I would call fun. That said, I have been working on a
Hi Bruce and others!I am still puzzeling how to speed up the process... I tried 4 prarallel sessions running exactly the same dataset as before. With 4 cores and 32 GB RAM I expected that I won't loose time / session. However, it was about 50% slower.
Shell 1:recon-all -s ernie1 -i
Hi Bruce!
Thanks for the fast response. I used the current stable version 5.3.0.1
(freesurfer-Darwin-lion-stable-pub-v5.3.0.1).
So I will try as you have suggested ...
Best wishes,
Lukas
Bruce Fischl Fri, 02 May 2014 05:47:26 -0700
Hi Luke
what version of FS are you running? We see
Hi Bruce!I just run: recon-all -s ernie2 -autorecon2 -openmp 4
mri_ca_register uses 100.9% CPU at most ...
Any idea? Should I try to recompile FS for the current MacOS release? If so, do I have to take care on special librariwa in order to enable the openmp option?
Best wishes,LukasHi Bruce!
Hi Lukas
sorry, I'm out of my depth on the mac. Perhaps Zeke knows what's going on?
Does OpenMP have to be enabled somehow?
Bruce
On Fri, 2 May 2014,
lukas.sch...@ukb.uni-bonn.de wrote:
Hi Bruce!
I just run: recon-all -s ernie2 -autorecon2 -openmp 4
mri_ca_register uses 100.9% CPU
If you are compiling with clang openmp might not work.
Peace,
Matt.
On 5/2/14, 2:13 PM, Bruce Fischl fis...@nmr.mgh.harvard.edu wrote:
Hi Lukas
sorry, I'm out of my depth on the mac. Perhaps Zeke knows what's going
on?
Does OpenMP have to be enabled somehow?
Bruce
On Fri, 2 May 2014,
