Hi Bob et al,
I prefer mri_strip_skull to mri_watershed. I think the former was a
previous method that has now been replaced by the latter. Please find
attached a small csh script (process_anatomy.csh) that I find useful for
doing the skull strip and segmentation (note that mri_watershed is
On Wed, 16 Oct 2002, Bob Thoma wrote:
All,
I've been having some difficulty with skull stripping, it doesn't appear to
be removing enough.
Hello again,
Just a quick correction -- you'd want to increase the preflooding height
from its default of 25 if the skull strip isn't removing
Hi Phoebe,
are you using a talairaching procedure? If so, please check that it worked
properly. If it fails, everything after it fails as well. Please also check
your T1 volume by bringing it up in tkmedit. The vast majority of the white
matter should have an intensity of exactly 110. If this is
