[Freesurfer] Ribbon

2012-07-08 Thread Colin Reveley
Hi - I need to make a ribbon volume. I have all the necessary surfaces, but I'm lacking an aseg.mgz because the data is monkey. I saw one guy on the list had success by just calling his orig.mgz aseg.mgz. I tried that, and it calculated the left right pial and white distances. Men sadly it

Re: [Freesurfer] Ribbon

2012-07-08 Thread Bruce Fischl
Hi Colin what is the representation you want in the end? You can also fill the interior of the surfaces using mris_fill then do some boolean algebra on the results of e.g. the white and pial interiors. cheers Bruce On Sun, 8 Jul 2012, Colin Reveley wrote: Hi - I need to make a ribbon

Re: [Freesurfer] Ribbon

2012-07-08 Thread Matt Glasser
Hi Bruce, He just needs the grey matter part of a typical ribbon.mgz volume. He lost some of his recon-all folder. Peace, Matt. -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: Sunday,