Thanks for your help. It works fine if one uses
preproc-sess -per-run -fwhm 5 -fsd bold -s sess01 ... .
On Fri, 19 Oct 2012 12:49:00 -0400
Douglas N Greve wrote:
> You'll have to run preproc like:
>preproc-sess -per-session -fwhm 5 -fsd bold -s sess01
> In this case, you are just specifi
Sorry, I have to cancel my last contribution. Another Problem crossed my way.
If I have more than one run, only the first one is preprocessed if i use
-per-session. What can I do about it?
If I use -per-run all runs are preprocessed, but selxavg3-sess tells me that it
can not determine the file
Hello Will,
Clicking the "Terminal" icon on the desktop will load Freesurfer. From
that point on its just a matter of typing the appropriate commands.
-Zeke
On 05/04/2013 09:27 AM, will brown wrote:
> I am endeavouring to install FreeSurfer on a windows 8 PC. Virtualbox is
> installed along wit
Hi,
I'm currently exploring gradient unwarping of data on a Siemens Trio
scanner (sonata coils) and a Siemens Verio scanner. I have got lists
with coil coefficients for both scanners.
According to the FS mail archives, you provide a binary for gradient
unwarping, but not any scanner tables (due to
Gonzalo,
Freeview will have a few small usability features to make it behave more
like tkmedit and tksurfer, but that update doesnt affect recon-all.
Nick
> Hi Nick:
>
> Ok... Tomorrow Sunday I will download and begin to test it...
>
> And which other new features has version 5.3.0 over 5.2
Follow the steps here:
http://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi
On 05/06/2013 01:41 AM, xiangbo_2010 wrote:
> Dear experts
>
> I want to analysis the asymmetry of surface area or thickness,
> what I do next? thanks!
>
>
>
> Bo Xiang
>
>
>
>
>
If you use -per-session, all of them should be processed. Why do you
think they are not? Also, just saying something is not working is not
very informative. Send command lines and terminal output of the error.
thanks!
doug
On 05/06/2013 05:46 AM, Jörg Pfannmöller wrote:
> Sorry, I have to cance
Hello Dr. Greve,
Thank you for your reply. I have set up the qdec.
I have gender as the discrete factor and age and clinical score as continuous
factors.
In order to look at the relationship between clinical score and whole brain
cortical thickness while accounting for age and gender effects,
Hi Bruce,
thank for new 5.3.
I'm finishing tracula analyis with 5.2 (I only have a subject that give me some
problem). Do you advice me to cancel my analysis and re-run it by new version
5.3? Is the results obtained with version 5.2 reliable?
Thank you very much,
Stefano
Messaggio origin
Sent on behalf of Thomas Grabowski, OHBM 2013, LOC Chair:
Open Brain Mapping at the 1st HBM Hackathon: Open Brain Mapping in the Cloud
**
OHBM 2013 is only six weeks away, bringing the brain mapping community to
Seattle, a city at the forefront of open neuroscience and information
technology.
Hi Valeria
what version are you running? It's hard to tell from a single slice, but
what is the white-matter appearing stuff that is outside the white matter
surface? I think that is what's messing stuff up. If you want to upload the
data subject one of us will take a look (that is, upload the
Hi Tracula team
I am using tracula to study the corticospinal tract in a patient
population. I am wondering if there would be a way to have the different
DTI metrics from the whole tract at different depth/portion of the tracts.
Something like the information given by the pathstats.byvoxel.txt file
Hi, all. I'm trying to refine my pial surfaces with a T2 (or, in this
case, t2*) image and I'm running into an error inside bbregister/fslregister.
I'm running the command:
recon-all -s gf04 -3T -autorecon3 -T2pial -T2
/mindhive/gablab/fluid/Analysis/Nipype/flash/gf04/tissue_parameters/T2star.mgz
Newer version of linux changed the way cshell behaves which causes
bbregister to crash in some instances.
Get a new version from here:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/bbregister
doug
On 5/6/13 8:10 PM, Todd Thompson wrote:
> Hi, all. I'm trying to refine my pial
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