Re: [Freesurfer] recon-all error: ERROR! FOV=272.000 > 256

Thank you for the response. Then what do you suggest i use? Because same error is occurred when i typed like this; [recon-all -subject ${subjName} -i T1_bfc.nii -hires -T2 T2_bfc.nii -T2pial -all] Thanks! Juhyoung > On Aug 6, 2017, at 3:04 AM, Bruce Fischl wrote:

Re: [Freesurfer] recon-all error: ERROR! FOV=272.000 > 256

can you send us the entire screeen output of that command? On Mon, 7 Aug 2017, Juhyoung Ryu wrote: Thank you for the response. Then what do you suggest i use? Because same error is occurred when i typed like this; [recon-all -subject ${subjName} -i T1_bfc.nii -hires -T2 T2_bfc.nii -T2pial

[Freesurfer] Thalamus ROI

Hi Freesurfer team, Is it possible to extract Thalamus as an ROI from aseg.mgz to be used for tractography in FSL. If so, what command I have to use to extract it. Can I use the LUT table to extract thalamus? Thanks, Sara ___ Freesurfer mailing list

[Freesurfer] TRACULA ERROR!!

Dear fellow researchers, I am running tracula pre-processing step, and the computer showed an error message: Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: Segmentation fault (core dumped) Linux Brain 4.2.0-27-generic #32~14.04.1-Ubuntu SMP