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Dear experts,
Is it necessary to install Matlab to use FsFast for functional connectivity?
Thanks in advance
Best
Maedeh,___
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Freesurfer@nmr.mgh.harvard.edu
Hello FS team,
When I try to run Physiological Noise Modeling through the PNM GUI, I get an
error message saying that I don't have permission to run the script
"_pnm_stage3." Do you know how I may remedy this?
Thanks,
Steven
--
Steven L. Meisler, M.S.E.
Clinical Research
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Hi Bruce,
Yes, we are trying to replicate a recent publication on morphometric similarity
networks and are using this subParcellation script
(https://github.com/RafaelRomeroGarcia/subParcellation ).
Cheers,
Steph
-Original Message-
From:
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Dear Freesurfer,
I'm enquiring about the known effect that pixel spacing has on the
reconstructions and final volume estimates produces by Freesurfer.
Specifically, is there a range of pixel spacing values that are necessary for
accuracy? Secondly,
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Hi Douglas,
I followed your advice doing the following:
mri_annotation2label \
--subject fsaverage \
--hemi lh \
--annotation new.aparc \
--outdir ./label_new
However, that results only in the single labels.
I
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Hello,
Is there a command to extract ROIs from atlases (ex. desikan) in nifti file
formats?
Thank you so much in advance for your time.
Best,
Da-Yea
--
Disclaimer:
The materials
Hi Michael
by default we resample everything to 1mm isotropic. Different parts of our
analysis are susceptible to changes in voxel size in different ways. I
expect the volume stream resulting in the aseg is ok with relatively coarse
voxels, but the surface stream will start to fail
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Oh! I thought with that flag I have to provide a colortable.
That worked perfectly now!! Thanks so much!
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Greve,
https://www.ismrm.org/jobs/j06670.pdf
The Connectome 2.0 Project is a new BRAIN initiative-funded effort at the
Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General
Hospital and Harvard Medical School. Building on our experience designing the
first Connectome scanner, we
Just add --ctab colortable
On 12/4/18 9:32 AM, Winkelbeiner, Stephanie A wrote:
> External Email - Use Caution
>
> Hi Douglas,
>
> I followed your advice doing the following:
>
> mri_annotation2label \
> --subject fsaverage \
> --hemi lh \
> --annotation new.aparc \
>
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Dear FreeSurfer experts,
I am running whole-brain based group comparisons of cortical measures between a
patient group and a control group using glm-fit and Monte-Carlo correction for
multiple comparisons.
It works fine but I am not sure where to
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Dear Help Desk - I have a few basic questions about freesurfer. I am retired
military bomb technician working on a blast TBI initiative and not a research
so please bear with me. We are looking at a long term study of bomb
technicians and I am
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Hello FreeSurfer Developers,
I am trying to bring functional ROIs defined in a different program into
FreeSurfer, so that I can dilate them into the white matter with –proj
abs, but I am running into a problem I was hoping you could help me
with.
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Dear freesurfer experts,
I want to calculate corrolation between two seeds with
freesurfer-linux-centos6_x86_64_stable_pub-v6 .after using fcseed-config and
fseed-sess , I used fcseedcor. the command that I trying to run is as
follow:
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Dear FreeSurfer experts,
I have a parcellation and a whole brain white matter files which are the
outputs of FreeSurfer.
I want to register them to my DWI. I mean I want my parcellation and white
matter to be in the physical space of my DWI.
Can
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