[Freesurfer] VM password

External Email - Use CautionDear FS experts, I am using the Oracle Virtual Box to install FS 7.2 on Windows. Could you send to me the passcode for the 7z archieve?   Thanks! bw Fabian ___ Freesurfer mailing list

Re: [Freesurfer] HRF with derivatives: results

External Email - Use Caution Yes, I think so. That would mean, that the additional frames correspond to the weights of the derivatives, right? But as I mentioned in the previous mail, they do have the same dimensions (in matlab, checking the beta.vol). Do you have any idea,

[Freesurfer] vertex ID in the contralateral hemisphere

External Email - Use Caution Dear experts, I would like to know the corresponding vertex in the contralateral hemisphere of a given vertex. Do you have a function that allows me to know it? Thank you very much in advance. Best regards, Marina

[Freesurfer] surface based analysis using Infant FS

External Email - Use Caution Dear FS experts, We are currently exploring the Infant Freesurfer pipeline for surface based analysis in our cohort. The generated surfaces seem reasonable, but now we are wondering, how to proceed. To our understanding, by looking at the recon-all

Re: [Freesurfer] TRACULA -bedp parallel processing

External Email - Use Caution Hi Anastasia, FSL version is 6.0.5.1 Thanks, Ela From: Yendiki,

Re: [Freesurfer] Custom LUT

yes, send the LUT file On 6/3/2022 3:03 PM, Benjamin Deck wrote: External Email - Use Caution Hi there, I created the file via a linux computer by hand. I also checked that there weren't any hidden characters and made sure that the file had spaces instead of tabs like the default

Re: [Freesurfer] aseg and surface edit corrections - grey matter surface fails editing

The problem here is that the white surface is not extending far enough because the white matter is underlabeled. I know it seems intuitive to edit the aseg to influence the the surface placement, it actually will have very little effect. In this case, you should edit the wm.mgz to fill in the

Re: [Freesurfer] mris_preproc read error

External Email - Use Caution Dear FS team, I am emailing to check in on the status of this issue. Any insights on how to move forward with this error? I can try rerunning this subject in the meantime to see if that fixes the problem. Thank you very much your assistance! Best

Re: [Freesurfer] vertex ID in the contralateral hemisphere

Hi Marina, I believe mris_left_right_register can do this. -Paul From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Marina Fern?ndez Sent: Tuesday, June 7, 2022 4:16 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] vertex ID in the

Re: [Freesurfer] TRACULA -bedp parallel processing

What if you create the directory (that shows up in the "not a directory" error)? From: Salar Dini, Elaheh Sent: Tuesday, June 7, 2022 11:46 AM To: Yendiki, Anastasia ; Freesurfer support list Subject: Re: TRACULA -bedp parallel processing External