[Freesurfer] Incorporating samseg segmentation into the recon-all pipeline

External Email - Use Caution /Hello everyone,/ /We have been utilizing freesurfer for our brain morphometry and processing pipelines, and have recently tested the samseg segmentation algorithm on a clinical cohort./ /With respect to some regions, we currently prefer its

[Freesurfer] mri_label2vol fill-ribbon segmentation fault

External Email - Use Caution Hi there, Having issues with the following command: mri_label2vol --annot lh.yeo_2011.annot --temp /mnt/c/Users/Ben/freesurfer/subjects/sub-DAEK/mri/orig.mgz --hemi lh --fill-ribbon --identity --subject sub-DAEK --o lh.sub-DAEK_annot_nat.nii.gz

Re: [Freesurfer] mri_label2vol fill-ribbon segmentation fault

External Email - Use Caution Hi, I would like to unsubscribe from these emails. Thank you. Manuela On Fri, Jun 10, 2022 at 8:47 AM Benjamin Deck wrote: > External Email - Use Caution > > Hi there, > > Having issues with the following command: > > mri_label2vol --annot

[Freesurfer] Postdoctoral Research Fellow position in Neuroimaging

Good afternoon, The Laboratories for Computational Neuroimaging at the Athinoula A. Martinos Center for Biomedical Imaging invites applications for a Postdoctoral Research Fellow position at the Massachusetts General Hospital and Harvard Medical

[Freesurfer] How is cache.th40.pos.sig.voxel.mgh computed, exactly?

External Email - Use Caution Hi, I was wondering if anyone knows how the numbers in cache.th40.pos.sig.voxel.mgh are computed, or where I'd look to learn this. There is a one-liner in the

[Freesurfer] -hires flag sometimes breaks recon-all

Hi, I have 7T MP2RAGE data of 25 individuals with an isotropic 0.7mm voxel resolution. I initially ran FS with the -hires flag to preserve the additional detail, but in 4 cases this crashed the process, while running the same image without the -hires flag works fine (surfaces visually

[Freesurfer] mri_label2vol misaligned for subcortical atlas

External Email - Use Caution Hi Freesurfer Devs, I’m attempting to transform the Harvard-Oxford subcortical atlas (obtained from