I am running Freesurfer on a Virtual machine on Windows 10.
1) I am having difficulty creating a shared drive between Windows and
Freesufer / Linux. Has anyone had success with this?
2) I tried to install gedit. I went to the Ubuntu software centre and
downloaded it. I then
cheers
Bruce
On
Thu,
13 Oct
2016, Brad Matushewski wrote:
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> I just tried to run my first recon-all.
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> What now?
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> Logo
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> Brad J. Matushewski, M.Sc., R.Kin., CSEP-CEP.
&g
...@nmr.mgh.harvard.edu] On Behalf Of Z K
Sent: Thursday, October 13, 2016 11:03 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>; Brad Matushewski
<bjmat...@uwo.ca>
Subject: Re: [Freesurfer] recon-all exited with ERRORS
I think its referring to the hard disk space in the virtual
rocess numerous subjects the VirtualBox version is
insuffiecient, you will have to use the Mac or Linux version.
On 10/13/2016 12:39 PM, Brad Matushewski wrote:
> I would appear that the allotted hard drive space is fixed as a function of
> the Freesurfer installation. There does not appear to
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Z K
Sent: Thursday, October 13, 2016 11:03 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>; Brad Matushewski
<bjmat...@uwo.ca>
Subject: Re: [Freesurfer] recon-all exited with ERRORS
I think its referring to t
I just tried to run my first recon-all.
What now?
[Logo]
Brad J. Matushewski, M.Sc., R.Kin., CSEP-CEP.
Laboratory for Brain & Heart Health
School of Kinesiology
Western University
Room 402, Arthur & Sonia Labatt Health Sciences Building
London, ON, Canada, N6A 5B9
Tel: (519) 661-2111 x
ficult on newer laptops:
https://help.ubuntu.com/community/UEFI
On Dec 2, 2016, at 8:26 AM, Brad Matushewski
<bjmat...@uwo.ca<mailto:bjmat...@uwo.ca>> wrote:
I have had some issues with Ubuntu (installation stops before completing). I
am currently trying to get a dual boot set
the process. For the version of linux to use... I
would recommend Ubuntu 14.04.5 LTS
(https://www.ubuntu.com/download/alternative-downloads)
On 10/13/2016 01:25 PM, Brad Matushewski wrote:
> Would a feasible approach be to set up a dual-boot on my PC so that I can
> boot directly into
such file or directory
Not sure what I did wrong.
Suggestions?
____
From: Brad Matushewski
Sent: Friday, December 2, 2016 8:48:11 AM
To: Freesurfer support list
Subject: RE: [Freesurfer] Ubuntu or Centos?
Ubuntu 14.04.5 LTS
From: freesurfer-boun.
change
things. Are the scan visually of different CNR?
cheers
Bruce
On Fri, 24 Mar 2017, Brad Matushewski wrote:
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> We have a study where subjects are scanned one, and a second time 6
> months later. I am looking for changes between the two time point and
> ofte
First scan is 005_IHD_1
Second scan is 005_IHD_1_post
These were in $SUBJECTS / ihd
I moved them into $SUBJECTS
(i.e. no subfolder within $SUBJECTS folder).
I am following this;
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/LongProcessing
FsTutorial/LongProcessing - Free Surfer
We have a study where subjects are scanned one, and a second time 6 months
later. I am looking for changes between the two time point and often times
there is a large difference in the "number of defect holes prior to fixing"
within the same subject.
Can anyone comment on the significance of
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Brad Matushewski
Sent: March 30, 2017 2:38 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Trying to compare 2 scans from same person, 6 months
apart.
First scan
Hello Freesurfer crowd. I am working on try to get my first fMRI scan working.
I have come a long ways in terms of setting things up but have reached a road
block that I have unable to get past.
I have been following along the slides from the power point presentation
"FSFAST Part 2". I got
External Email - Use Caution
Not sure what happened here, but running Freesurfer on Ubuntu and not getting
this error when trying to view volumes:
freeview -v \
mri/T1.mgz \
mri/brainmask.mgz \
mri/wm.mgz:visible=0 \
mri/aseg.mgz:colormap=lut:opacity=0.2 \
-f
External Email - Use Caution
Silly error - there was an extra space in the line.
Problem solved.
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Brad Matushewski
Sent: Thursday, June 14, 2018 10:04:57 AM
To: freesurfer
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