[Freesurfer] recon-all exited with errors

Hello, I am very new to freesurfer who have been using SPM and FSL, and just started doing individual subject analysis. I already had an error message on recon-all step. I am using: Vertualbox, OS is RedHat 64-bit I am using bash (I prefer to do so) so I am not in tsch shell. The recon-all

Re: [Freesurfer] recon-all exited with errors

Thank you, Zeke for your help! Best wishes, Hisako -Original Message- From: Z K [mailto:zkauf...@nmr.mgh.harvard.edu] Sent: Tuesday, August 04, 2015 4:08 PM To: Freesurfer support list; Fujiwara, Hisako Subject: Re: [Freesurfer] recon-all exited with errors Hello Hisako

[Freesurfer] vertex wise cortical thickness within ROIs

External Email - Use Caution Hello FreeSurfer Developers, I'm attempting to compute absolute cortical thickness for each vertices within anatomical ROIs using apac.annot. I have successfully output the whole brain vertex wise cortical thickness using: mris_convert -c

Re: [Freesurfer] vertex wise cortical thickness within ROIs

: Friday, April 27, 2018 2:23 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] vertex wise cortical thickness within ROIs Hi Hisako you can use mris_anatomical_stats for this purpose. cheers Bruce On Fri, 27 Apr 2018, Fujiwara, Hisako