Re: [Freesurfer] 3D printing from freesurfer

External Email - Use Caution You can print from the surfaces. Using mris_convert --combinesurfs $SUBJECTS_DIR/${subject}/surf/lh.pial $SUBJECTS_DIR/${subject}/surf/rh.pial \ $SUBJECTS_DIR/cortical.stl will take the pial surfaces from both hemispheres and combine

Re: [Freesurfer] resample_type ignored by mri_convert with --like argument?

External Email - Use Caution Thanks, that worked without error and the resampling looks correct. Jim On Thu, May 12, 2022, 11:42 PM Douglas N. Greve wrote: > Sorry, one more thing. Add --regheader to the command lien > > On 5/12/2022 5:12 PM, James Hengen

Re: [Freesurfer] resample_type ignored by mri_convert with --like argument?

ers. Is mri_vol2vol looking for a Freesurfer generated registration somewhere in the subject directory? Thanks! Jim H On Thu, May 12, 2022 at 3:43 PM Douglas N. Greve wrote: > try this > mri_vol2vol --targ T1w_MNI.nii.gz --interp nearest --mov > ICBM152_2009c_AtlasWhite.nii.gz --o WhiteAtl

[Freesurfer] resample_type ignored by mri_convert with --like argument?

External Email - Use Caution Hello FS experts, I'm trying to reslice a third-party atlas into the same resolution as my data in MNI space. I am using the following command: mri_convert --like T1w_MNI.nii.gz --resample_type nearest ICBM152_2009c_AtlasWhite.nii.gz

[Freesurfer] Post-doctoral position at University of Pittsburgh in population neuroscience

External Email - Use Caution *Dear All, please see the opportunity for a Post-Doctoral Associate position:* *Link to apply*: Job Description - Post Doctoral Associate (ROSANO) (21008433) (taleo.net)

[Freesurfer] Recon-all failing with pre-skullstripped input data (mri_em_register can't find brainmask.mgz)

External Email - Use Caution Hello FS experts, I downloaded some anatomical data. I have defaced full images and pre-skullstripped images for each participant. I tried the defaced images first, but FS skullstripping looks a little off (possibly because the defacing hides bits of

Re: [Freesurfer] Recon-all failing with pre-skullstripped input data (mri_em_register can't find brainmask.mgz)

t; Hope it helps. > > > > Best, > > > > Yujing > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *James Hengenius > *Sent:* Thursday, December 28, 2023 5:06 PM > *To:* Freesurfer support li