[Freesurfer] minor edits to aseg lead to exist with errors in about 25% of my scans

2016-12-13 Thread Lucette Cysique
Dear FS Wiki I run my scan in FS without any problem example: #@#%# recon-all-run-time-hours 8.342 recon-all -s 877 finished without error then I do some edits to the aseg in freeview edits include: relabelling correctly lateral ventricles voxels mostly in the posterior horn of the lateral

Re: [Freesurfer] minor edits to aseg lead to exist with errors in about 25% of my scans

2016-12-18 Thread Lucette Cysique
sending this again as I have had no responses Thanks From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Lucette Cysique Sent: Wednesday, December 14, 2016 12:52:11 PM To: freesurfer@nmr.mgh.harvard.edu Cc: Madeleine Nichols (Redirection) Subject

Re: [Freesurfer] minor edits to aseg lead to exist with errors in about 25% of my scans

2017-01-04 Thread Lucette Cysique
ique-group From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Lucette Cysique Sent: Monday, December 19, 2016 12:37:13 PM To: freesurfer@nmr.mgh.harvard.edu Cc: Madeleine Nichols (Redirection) Subject: Re: [Freesurfer] minor edits to aseg lead to exist with errors in about

[Freesurfer] minor edits to aseg lead to exist with errors in about 25% of my scans

2017-01-05 Thread Lucette Cysique
6 beta freeview - stopped loading remaining files when one is missing (Ruopeng Wang) 5. Re: 6.0.0 release (Tobias Granberg) 6. Problem with freeview (Jennifer Szeto) 7. Re: minor edits to aseg lead to exist with errors in about 25% of my scans (Lucette Cysique) 8. Re: minor ed

[Freesurfer] Freesurfer 6.0 and 5.3 differences in eTIV but not in supratentorial volume

2017-08-09 Thread Lucette Cysique
Hello all FYI I have found non-negligeable differences in eTIV for 5.3 versus 6.0 in my healthy young sample It is probably due to the cerebellum computation changes (presented in released notes for 6.0) Unsurprisingly the supratentorial volumes 5.3 versus 6.0 are very similar (all was chec

[Freesurfer] How to obtain stats on custom anatomical ROI in freeview/freesurfer

2014-05-26 Thread Lucette Cysique
Dear Ruopeng and colleagues, I am interested in following same tracing protocol for the amygdala as in "Neuroimage. 2012 April 2; 60(2): 1226–1235: "A reliable protocol for the manual segmentation of the human amygdala and its subregions using ultra-high resolution MRI” I would like as they di