[Freesurfer] mri_watershed error, White Matter Intensity too high

2014-04-18 Thread shahrzad kharabian
Dear experts, I have a encountered an Error while doing skull-stripping using freesurfer on my T1 weighted images, using mri_watershed I am using the following command: mri_watershed -atlas mprage_RPI.mgz mprage_skullstrip.mgz and here is the error: mri_watershed Error: w=White Matter

[Freesurfer] Fw: mri_watershed error, White Matter Intensity too high

2014-04-19 Thread shahrzad kharabian
On Friday, April 18, 2014 11:43 PM, shahrzad kharabian shahrzad_k...@yahoo.com wrote: Dear experts, I have a encountered an Error while doing skull-stripping using freesurfer on my T1 weighted images, using mri_watershed I am using the following command: mri_watershed -atlas

[Freesurfer] Fw: Fw: mri_watershed error, White Matter Intensity too high

2014-04-19 Thread shahrzad kharabian
On Sunday, April 20, 2014 2:25 AM, Bruce Fischl fis...@nmr.mgh.harvard.edu wrote: Hi Shahrzad can you cc the list so that others can answer? thanks Bruce On Sat, 19 Apr 2014, shahrzad kharabian wrote: Hi Bruce, True, I am trying to use Freesurfer skullstripping as a first step

[Freesurfer] error while running "-hippocampal-subfields-T1" with Freesurfer 6.0

2019-09-09 Thread shahrzad kharabian
External Email - Use Caution Hi, I have already run recon-all with default options on a large set of T1-weighted images, using Freesurfer v 6.0. Now we want to extract the hippocmpal subfields from these already processed images. Apparently our installation was missing Matlab