Glad to hear it worked out
> On Feb 24, 2017, at 5:01 PM, Rockers, Elijah D.
> OK, sorry for spamming the list. I fixed the the faulty skullstrip by using
> recon-all -skullstrip -clean-bm -no-wsgcaatlas -subjid
> Currently redoing the
OK, sorry for spamming the list. I fixed the the faulty skullstrip by using
recon-all -skullstrip -clean-bm -no-wsgcaatlas -subjid
Currently redoing the surface reconstructions, but it should be OK now.
Thanks for the nice documentation.
On Fri, 2017-02-24 at 15:30 -0600, Elijah Rockers
As far as I can tell, everything looks OK up until brainmask.mgz. The
skullstrip step seems to have cropped out the brain and left the neck...
On Fri, 2017-02-24 at 12:58 -0600, Elijah Rockers wrote:
> Hello all,
> I recon-all'd ~40 different subjects. I have been going through all the
I recon-all'd ~40 different subjects. I have been going through all the
images to make sure they were processed correctly. Most required no no
editing and recon-all did a very good job.
But for one scan in particular, it looks like Freesurfer thinks the top
of the spinal cord is the