Re: [Freesurfer] LGI for the lobar annotation

2018-04-19 Thread Fernanda Hansen P. de Moraes 
External Email - Use Caution

Thank you!! :D

On Thu, Apr 19, 2018 at 12:57 PM Douglas N. Greve 
wrote:

> yes
>
>
> On 04/19/2018 07:17 AM, Fernanda Hansen P. de Moraes wrote:
> > Douglas, thank you very much again.
> > So I can assume it is the lGI for the area (in this case the lobe)?
> >
> > Thank you again!
> >
> > On Wed, Apr 18, 2018 at 11:48 PM Douglas Greve  > > wrote:
> >
> > The "intensity" is the mean value of the input (lh.pial_lgi in
> > this case) averaged over vertices. If  you wan the total number,
> > multiply it by the number of vertices or re-run with --accumulate.
> > The area is the surface area of the entire lobe.
> >
> >
> > On 4/18/18 3:23 PM, Fernanda Hansen P. de Moraes wrote:
> >> Sorry, my mistake.
> >>
> >> mri_segstats --annot DA011 lh lobesStrict --i
> >> DA011/surf/lh.pial_lgi --sum lh.lobesStrict.annot.pial_lgi.stats
> >>
> >> On Wed, Apr 18, 2018 at 4:13 PM Douglas N. Greve
> >> > wrote:
> >>
> >> What is your command line? Also, please remember to post to
> >> the list
> >>
> >>
> >> On 04/18/2018 02:10 PM, Fernanda Hansen P. de Moraes wrote:
> >> > Dear Douglas,
> >> >
> >> > thank you.
> >> >
> >> >  The code worked, but I didn't understand the result very
> >> well. What
> >> > means intensity? The area, is the ara from the piall_lgi
> >> surface
> >> > (outer surface)?
> >> >
> >> > Thank you again
> >> >
> >> > On Tue, Apr 17, 2018 at 1:07 PM Douglas Greve
> >> 
> >> >  >> >> wrote:
> >> >
> >> > If you run it with --help you will see an example
> >> >
> >> >
> >> > On 4/16/18 7:16 AM, Fernanda Hansen P. de Moraes wrote:
> >> >> Thank you, Douglas,
> >> >>
> >> >> do you have any suggestions on how to make you work?
> >> >>
> >> >> Fernanda
> >> >>
> >> >>
> >> >>
> >> >> On Fri, Apr 13, 2018 at 5:56 PM Douglas Greve
> >> >>  >> 
> >>  >> >> wrote:
> >> >>
> >> >> that should work, except the command line is not
> >> quite right
> >> >>
> >> >>
> >> >> On 4/13/18 4:22 PM, Fernanda Hansen P. de Moraes
> >> wrote:
> >> >>> Good night,
> >> >>>
> >> >>> does anyone know if it is possible to calculate
> >> the lGI for
> >> >>> the ?h.lobesStrict.annot? And if it yes, how can
> >> I do it?
> >> >>>
> >> >>> I've already tried to use:
> >> >>>
> >> >>> /mri_segstats --annot
> >> subjxx/label/lh.lobesStrict.annot --i
> >> >>>  $SUBJECTS_DIR/subjxx/surf/lh.pial_lgi --sum
> >> >>>  lh.lobesStrict.annot.pial_lgi.stats/
> >> >>>
> >> >>> Thank you!
> >> >>> --
> >> >>> Fernanda Hansen P. de Moraes
> >> >>> Física Médica | Instituto D'Or de Pesquisa e
> >> Ensino | Rede
> >> >>> D'Or São Luiz
> >> >>>
> >> >>>
> >> >>>  ___
> >> >>> Freesurfer mailing list
> >> >>> Freesurfer@nmr.mgh.harvard.edu
> >> 
> >> >>>  >> >
> >> >>>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >> >>
> >> >>  ___
> >> >> Freesurfer mailing list
> >> >> Freesurfer@nmr.mgh.harvard.edu
> >> 
> >> >>  >> >
> >> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >> >>
> >> >>
> >> >> The information in this e-mail is intended only
> >> for the
> >> >> person to whom it is
> >> >> addressed. If you believe this e-mail was sent to
> >> you in
> >> >> error and the e-mail
> >> >> contains patient information, please contact the
> >> Partners
> >> >> Compliance HelpLine at
> >> >>

Re: [Freesurfer] LGI for the lobar annotation

2018-04-19 Thread Douglas N. Greve 
yes


On 04/19/2018 07:17 AM, Fernanda Hansen P. de Moraes wrote:
> Douglas, thank you very much again.
> So I can assume it is the lGI for the area (in this case the lobe)?
>
> Thank you again!
>
> On Wed, Apr 18, 2018 at 11:48 PM Douglas Greve  > wrote:
>
> The "intensity" is the mean value of the input (lh.pial_lgi in
> this case) averaged over vertices. If  you wan the total number,
> multiply it by the number of vertices or re-run with --accumulate.
> The area is the surface area of the entire lobe.
>
>
> On 4/18/18 3:23 PM, Fernanda Hansen P. de Moraes wrote:
>> Sorry, my mistake.
>>
>> mri_segstats --annot DA011 lh lobesStrict --i
>> DA011/surf/lh.pial_lgi --sum lh.lobesStrict.annot.pial_lgi.stats
>>
>> On Wed, Apr 18, 2018 at 4:13 PM Douglas N. Greve
>> > wrote:
>>
>> What is your command line? Also, please remember to post to
>> the list
>>
>>
>> On 04/18/2018 02:10 PM, Fernanda Hansen P. de Moraes wrote:
>> > Dear Douglas,
>> >
>> > thank you.
>> >
>> >  The code worked, but I didn't understand the result very
>> well. What
>> > means intensity? The area, is the ara from the piall_lgi
>> surface
>> > (outer surface)?
>> >
>> > Thank you again
>> >
>> > On Tue, Apr 17, 2018 at 1:07 PM Douglas Greve
>> 
>> > > >> wrote:
>> >
>> >     If you run it with --help you will see an example
>> >
>> >
>> >     On 4/16/18 7:16 AM, Fernanda Hansen P. de Moraes wrote:
>> >>     Thank you, Douglas,
>> >>
>> >>     do you have any suggestions on how to make you work?
>> >>
>> >>     Fernanda
>> >>
>> >>
>> >>
>> >>     On Fri, Apr 13, 2018 at 5:56 PM Douglas Greve
>> >>     > 
>> > >> wrote:
>> >>
>> >>         that should work, except the command line is not
>> quite right
>> >>
>> >>
>> >>         On 4/13/18 4:22 PM, Fernanda Hansen P. de Moraes
>> wrote:
>> >>>         Good night,
>> >>>
>> >>>         does anyone know if it is possible to calculate
>> the lGI for
>> >>>         the ?h.lobesStrict.annot? And if it yes, how can
>> I do it?
>> >>>
>> >>>         I've already tried to use:
>> >>>
>> >>>         /mri_segstats --annot
>> subjxx/label/lh.lobesStrict.annot --i
>> >>>  $SUBJECTS_DIR/subjxx/surf/lh.pial_lgi --sum
>> >>>  lh.lobesStrict.annot.pial_lgi.stats/
>> >>>
>> >>>         Thank you!
>> >>>         --
>> >>>         Fernanda Hansen P. de Moraes
>> >>>         Física Médica | Instituto D'Or de Pesquisa e
>> Ensino | Rede
>> >>>         D'Or São Luiz
>> >>>
>> >>>
>> >>>  ___
>> >>>         Freesurfer mailing list
>> >>> Freesurfer@nmr.mgh.harvard.edu
>> 
>> >>>         > >
>> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>> >>
>> >>  ___
>> >>         Freesurfer mailing list
>> >> Freesurfer@nmr.mgh.harvard.edu
>> 
>> >>         > >
>> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>> >>
>> >>
>> >>         The information in this e-mail is intended only
>> for the
>> >>         person to whom it is
>> >>         addressed. If you believe this e-mail was sent to
>> you in
>> >>         error and the e-mail
>> >>         contains patient information, please contact the
>> Partners
>> >>         Compliance HelpLine at
>> >> http://www.partners.org/complianceline . If the e-mail was
>> >>         sent to you in error
>> >>         but does not contain patient information, please
>> contact the
>> >>         sender and properly
>> >>         dispose of the e-mail.
>> >>
>> >>     --
>> >>     Fernanda Hansen P. de Moraes
>> >>     Física Médica | Instituto D'Or de

Re: [Freesurfer] LGI for the lobar annotation

2018-04-19 Thread Fernanda Hansen P. de Moraes 
Douglas, thank you very much again.
So I can assume it is the lGI for the area (in this case the lobe)?

Thank you again!

On Wed, Apr 18, 2018 at 11:48 PM Douglas Greve 
wrote:

> The "intensity" is the mean value of the input (lh.pial_lgi in this case)
> averaged over vertices. If  you wan the total number, multiply it by the
> number of vertices or re-run with --accumulate. The area is the surface
> area of the entire lobe.
>
> On 4/18/18 3:23 PM, Fernanda Hansen P. de Moraes wrote:
>
> Sorry, my mistake.
>
> mri_segstats --annot DA011 lh lobesStrict --i DA011/surf/lh.pial_lgi --sum
> lh.lobesStrict.annot.pial_lgi.stats
>
> On Wed, Apr 18, 2018 at 4:13 PM Douglas N. Greve 
> wrote:
>
>> What is your command line? Also, please remember to post to the list
>>
>>
>> On 04/18/2018 02:10 PM, Fernanda Hansen P. de Moraes wrote:
>> > Dear Douglas,
>> >
>> > thank you.
>> >
>> >  The code worked, but I didn't understand the result very well. What
>> > means intensity? The area, is the ara from the piall_lgi surface
>> > (outer surface)?
>> >
>> > Thank you again
>> >
>> > On Tue, Apr 17, 2018 at 1:07 PM Douglas Greve > > > wrote:
>> >
>> > If you run it with --help you will see an example
>> >
>> >
>> > On 4/16/18 7:16 AM, Fernanda Hansen P. de Moraes wrote:
>> >> Thank you, Douglas,
>> >>
>> >> do you have any suggestions on how to make you work?
>> >>
>> >> Fernanda
>> >>
>> >>
>> >>
>> >> On Fri, Apr 13, 2018 at 5:56 PM Douglas Greve
>> >> > wrote:
>> >>
>> >> that should work, except the command line is not quite right
>> >>
>> >>
>> >> On 4/13/18 4:22 PM, Fernanda Hansen P. de Moraes wrote:
>> >>> Good night,
>> >>>
>> >>> does anyone know if it is possible to calculate the lGI for
>> >>> the ?h.lobesStrict.annot? And if it yes, how can I do it?
>> >>>
>> >>> I've already tried to use:
>> >>>
>> >>> /mri_segstats --annot subjxx/label/lh.lobesStrict.annot --i
>> >>> $SUBJECTS_DIR/subjxx/surf/lh.pial_lgi --sum
>> >>> lh.lobesStrict.annot.pial_lgi.stats/
>> >>>
>> >>> Thank you!
>> >>> --
>> >>> Fernanda Hansen P. de Moraes
>> >>> Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede
>> >>> D'Or São Luiz
>> >>>
>> >>>
>> >>> ___
>> >>> Freesurfer mailing list
>> >>> Freesurfer@nmr.mgh.harvard.edu
>> >>> 
>> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>> >>
>> >> ___
>> >> Freesurfer mailing list
>> >> Freesurfer@nmr.mgh.harvard.edu
>> >> 
>> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>> >>
>> >>
>> >> The information in this e-mail is intended only for the
>> >> person to whom it is
>> >> addressed. If you believe this e-mail was sent to you in
>> >> error and the e-mail
>> >> contains patient information, please contact the Partners
>> >> Compliance HelpLine at
>> >> http://www.partners.org/complianceline . If the e-mail was
>> >> sent to you in error
>> >> but does not contain patient information, please contact the
>> >> sender and properly
>> >> dispose of the e-mail.
>> >>
>> >> --
>> >> Fernanda Hansen P. de Moraes
>> >> Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or
>> >> São Luiz
>> >>
>> >>
>> >> ___
>> >> Freesurfer mailing list
>> >> Freesurfer@nmr.mgh.harvard.edu
>> >> 
>> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>> >
>> > --
>> > Fernanda Hansen P. de Moraes
>> > Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz
>>
>> --
> Fernanda Hansen P. de Moraes
> Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz
>
>
> --
Fernanda Hansen P. de Moraes
Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz
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Re: [Freesurfer] LGI for the lobar annotation

2018-04-18 Thread Douglas Greve 
The "intensity" is the mean value of the input (lh.pial_lgi in this 
case) averaged over vertices. If  you wan the total number, multiply it 
by the number of vertices or re-run with --accumulate. The area is the 
surface area of the entire lobe.



On 4/18/18 3:23 PM, Fernanda Hansen P. de Moraes wrote:

Sorry, my mistake.

mri_segstats --annot DA011 lh lobesStrict --i DA011/surf/lh.pial_lgi 
--sum lh.lobesStrict.annot.pial_lgi.stats


On Wed, Apr 18, 2018 at 4:13 PM Douglas N. Greve 
> wrote:


What is your command line? Also, please remember to post to the list


On 04/18/2018 02:10 PM, Fernanda Hansen P. de Moraes wrote:
> Dear Douglas,
>
> thank you.
>
>  The code worked, but I didn't understand the result very well.
What
> means intensity? The area, is the ara from the piall_lgi surface
> (outer surface)?
>
> Thank you again
>
> On Tue, Apr 17, 2018 at 1:07 PM Douglas Greve

> >>
wrote:
>
>     If you run it with --help you will see an example
>
>
>     On 4/16/18 7:16 AM, Fernanda Hansen P. de Moraes wrote:
>>     Thank you, Douglas,
>>
>>     do you have any suggestions on how to make you work?
>>
>>     Fernanda
>>
>>
>>
>>     On Fri, Apr 13, 2018 at 5:56 PM Douglas Greve
>>     
>>
wrote:
>>
>>         that should work, except the command line is not quite
right
>>
>>
>>         On 4/13/18 4:22 PM, Fernanda Hansen P. de Moraes wrote:
>>>         Good night,
>>>
>>>         does anyone know if it is possible to calculate the
lGI for
>>>         the ?h.lobesStrict.annot? And if it yes, how can I do it?
>>>
>>>         I've already tried to use:
>>>
>>>         /mri_segstats --annot
subjxx/label/lh.lobesStrict.annot --i
>>>         $SUBJECTS_DIR/subjxx/surf/lh.pial_lgi --sum
>>>         lh.lobesStrict.annot.pial_lgi.stats/
>>>
>>>         Thank you!
>>>         --
>>>         Fernanda Hansen P. de Moraes
>>>         Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede
>>>         D'Or São Luiz
>>>
>>>
>>>  ___
>>>         Freesurfer mailing list
>>> Freesurfer@nmr.mgh.harvard.edu

>>>         >
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>  ___
>>         Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu

>>         >
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>>         The information in this e-mail is intended only for the
>>         person to whom it is
>>         addressed. If you believe this e-mail was sent to you in
>>         error and the e-mail
>>         contains patient information, please contact the Partners
>>         Compliance HelpLine at
>> http://www.partners.org/complianceline . If the e-mail was
>>         sent to you in error
>>         but does not contain patient information, please
contact the
>>         sender and properly
>>         dispose of the e-mail.
>>
>>     --
>>     Fernanda Hansen P. de Moraes
>>     Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or
>>     São Luiz
>>
>>
>>     ___
>>     Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu

>>     >
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
> --
> Fernanda Hansen P. de Moraes
> Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or
São Luiz

--
Fernanda Hansen P. de Moraes
Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz


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Re: [Freesurfer] LGI for the lobar annotation

2018-04-18 Thread Fernanda Hansen P. de Moraes 
Sorry, my mistake.

mri_segstats --annot DA011 lh lobesStrict --i DA011/surf/lh.pial_lgi --sum
lh.lobesStrict.annot.pial_lgi.stats

On Wed, Apr 18, 2018 at 4:13 PM Douglas N. Greve 
wrote:

> What is your command line? Also, please remember to post to the list
>
>
> On 04/18/2018 02:10 PM, Fernanda Hansen P. de Moraes wrote:
> > Dear Douglas,
> >
> > thank you.
> >
> >  The code worked, but I didn't understand the result very well. What
> > means intensity? The area, is the ara from the piall_lgi surface
> > (outer surface)?
> >
> > Thank you again
> >
> > On Tue, Apr 17, 2018 at 1:07 PM Douglas Greve  > > wrote:
> >
> > If you run it with --help you will see an example
> >
> >
> > On 4/16/18 7:16 AM, Fernanda Hansen P. de Moraes wrote:
> >> Thank you, Douglas,
> >>
> >> do you have any suggestions on how to make you work?
> >>
> >> Fernanda
> >>
> >>
> >>
> >> On Fri, Apr 13, 2018 at 5:56 PM Douglas Greve
> >> > wrote:
> >>
> >> that should work, except the command line is not quite right
> >>
> >>
> >> On 4/13/18 4:22 PM, Fernanda Hansen P. de Moraes wrote:
> >>> Good night,
> >>>
> >>> does anyone know if it is possible to calculate the lGI for
> >>> the ?h.lobesStrict.annot? And if it yes, how can I do it?
> >>>
> >>> I've already tried to use:
> >>>
> >>> /mri_segstats --annot subjxx/label/lh.lobesStrict.annot --i
> >>> $SUBJECTS_DIR/subjxx/surf/lh.pial_lgi --sum
> >>> lh.lobesStrict.annot.pial_lgi.stats/
> >>>
> >>> Thank you!
> >>> --
> >>> Fernanda Hansen P. de Moraes
> >>> Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede
> >>> D'Or São Luiz
> >>>
> >>>
> >>> ___
> >>> Freesurfer mailing list
> >>> Freesurfer@nmr.mgh.harvard.edu
> >>> 
> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >>
> >> ___
> >> Freesurfer mailing list
> >> Freesurfer@nmr.mgh.harvard.edu
> >> 
> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >>
> >>
> >> The information in this e-mail is intended only for the
> >> person to whom it is
> >> addressed. If you believe this e-mail was sent to you in
> >> error and the e-mail
> >> contains patient information, please contact the Partners
> >> Compliance HelpLine at
> >> http://www.partners.org/complianceline . If the e-mail was
> >> sent to you in error
> >> but does not contain patient information, please contact the
> >> sender and properly
> >> dispose of the e-mail.
> >>
> >> --
> >> Fernanda Hansen P. de Moraes
> >> Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or
> >> São Luiz
> >>
> >>
> >> ___
> >> Freesurfer mailing list
> >> Freesurfer@nmr.mgh.harvard.edu
> >> 
> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> > --
> > Fernanda Hansen P. de Moraes
> > Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz
>
> --
Fernanda Hansen P. de Moraes
Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz
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addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
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Re: [Freesurfer] LGI for the lobar annotation

2018-04-18 Thread Douglas N. Greve 
What is your command line? Also, please remember to post to the list


On 04/18/2018 02:10 PM, Fernanda Hansen P. de Moraes wrote:
> Dear Douglas,
>
> thank you.
>
>  The code worked, but I didn't understand the result very well. What 
> means intensity? The area, is the ara from the piall_lgi surface 
> (outer surface)?
>
> Thank you again
>
> On Tue, Apr 17, 2018 at 1:07 PM Douglas Greve  > wrote:
>
> If you run it with --help you will see an example
>
>
> On 4/16/18 7:16 AM, Fernanda Hansen P. de Moraes wrote:
>> Thank you, Douglas,
>>
>> do you have any suggestions on how to make you work?
>>
>> Fernanda
>>
>>
>>
>> On Fri, Apr 13, 2018 at 5:56 PM Douglas Greve
>> > wrote:
>>
>> that should work, except the command line is not quite right
>>
>>
>> On 4/13/18 4:22 PM, Fernanda Hansen P. de Moraes wrote:
>>> Good night,
>>>
>>> does anyone know if it is possible to calculate the lGI for
>>> the ?h.lobesStrict.annot? And if it yes, how can I do it?
>>>
>>> I've already tried to use:
>>>
>>> /mri_segstats --annot subjxx/label/lh.lobesStrict.annot --i
>>> $SUBJECTS_DIR/subjxx/surf/lh.pial_lgi --sum
>>> lh.lobesStrict.annot.pial_lgi.stats/
>>>
>>> Thank you!
>>> -- 
>>> Fernanda Hansen P. de Moraes
>>> Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede
>>> D'Or São Luiz
>>>
>>>
>>> ___
>>> Freesurfer mailing list
>>> Freesurfer@nmr.mgh.harvard.edu
>>> 
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>> ___
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> 
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>> The information in this e-mail is intended only for the
>> person to whom it is
>> addressed. If you believe this e-mail was sent to you in
>> error and the e-mail
>> contains patient information, please contact the Partners
>> Compliance HelpLine at
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>> Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or
>> São Luiz
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> Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz

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Re: [Freesurfer] LGI for the lobar annotation

2018-04-16 Thread Fernanda Hansen P. de Moraes 
Thank you, Douglas,

do you have any suggestions on how to make you work?

Fernanda



On Fri, Apr 13, 2018 at 5:56 PM Douglas Greve 
wrote:

> that should work, except the command line is not quite right
>
> On 4/13/18 4:22 PM, Fernanda Hansen P. de Moraes wrote:
>
> Good night,
>
> does anyone know if it is possible to calculate the lGI for the
> ?h.lobesStrict.annot? And if it yes, how can I do it?
>
> I've already tried to use:
>
> *mri_segstats --annot subjxx/label/lh.lobesStrict.annot --i
> $SUBJECTS_DIR/subjxx/surf/lh.pial_lgi --sum
> lh.lobesStrict.annot.pial_lgi.stats*
>
> Thank you!
> --
> Fernanda Hansen P. de Moraes
> Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz
>
>
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> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
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> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
-- 
Fernanda Hansen P. de Moraes
Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz
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contains patient information, please contact the Partners Compliance HelpLine at
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Re: [Freesurfer] LGI for the lobar annotation

2018-04-13 Thread Douglas Greve 

that should work, except the command line is not quite right


On 4/13/18 4:22 PM, Fernanda Hansen P. de Moraes wrote:

Good night,

does anyone know if it is possible to calculate the lGI for the 
?h.lobesStrict.annot? And if it yes, how can I do it?


I've already tried to use:

/mri_segstats --annot subjxx/label/lh.lobesStrict.annot --i 
$SUBJECTS_DIR/subjxx/surf/lh.pial_lgi --sum 
lh.lobesStrict.annot.pial_lgi.stats/


Thank you!
--
Fernanda Hansen P. de Moraes
Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz


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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
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[Freesurfer] LGI for the lobar annotation

2018-04-13 Thread Fernanda Hansen P. de Moraes 
Good night,

does anyone know if it is possible to calculate the lGI for the
?h.lobesStrict.annot? And if it yes, how can I do it?

I've already tried to use:

*mri_segstats --annot subjxx/label/lh.lobesStrict.annot --i
$SUBJECTS_DIR/subjxx/surf/lh.pial_lgi --sum
lh.lobesStrict.annot.pial_lgi.stats*

Thank you!
-- 
Fernanda Hansen P. de Moraes
Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.