Re: [Freesurfer] multi-frame input error with PAR/SEC origin file

2017-08-09 Thread Bruce Fischl
From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl > [fis...@nmr.mgh.harvard.edu] > Sent: Wednesday, August 09, 2017 1:20 AM > To: Freesurfer support list > Subject: Re: [Freesurfer] multi-frame input error with PAR/SEC origin f

Re: [Freesurfer] multi-frame input error with PAR/SEC origin file

2017-08-09 Thread Yagmur Ozdemir 19
] Sent: Wednesday, August 09, 2017 1:20 AM To: Freesurfer support list Subject: Re: [Freesurfer] multi-frame input error with PAR/SEC origin file Hi Idil you have to figure out what the input volume has more than 1 frame (that is, why is it 4d). It could be because you saved phase and mag, or because

Re: [Freesurfer] multi-frame input error with PAR/SEC origin file

2017-08-08 Thread Bruce Fischl
Hi Idil you have to figure out what the input volume has more than 1 frame (that is, why is it 4d). It could be because you saved phase and mag, or because there are multiple echoes, but until you understand what the additional frames are we can't process it. YOu can start by bringing the

[Freesurfer] multi-frame input error with PAR/SEC origin file

2017-08-08 Thread Yagmur Ozdemir 19
Hello FreeSurfer experts, I am trying to run recon-all on a nifti file converted from PAR/SEC using dcm2niix, and this error came up pretty soon after the script started to run; >> mri_convert.bin >> /home/lab/Desktop/freesurfer/subjects/sub-06_run-01_T1w.nii.gz >>