[Freesurfer] optseq2 question

2016-09-21 Thread Yoed Kenett
hello i am trying to use optseq2 to design a study. I have a new mac book pro with El Capitan installed. I have tried downloading all different optseq2 versions but each time when i try to run it through the terminal i get the same exact error: -bash: optseq2: command not found what am i doing wr

Re: [Freesurfer] Optseq2 question- duration of final event

2015-04-20 Thread Dan Goldman
It seems that I am unable to run the file that you sent on a mac- is it a different version from the one available for MacOSX here? https://surfer.nmr.mgh.harvard.edu/optseq/ On Mon, Apr 20, 2015 at 2:53 PM, Dan Goldman wrote: > Nevermind, I got it to work! Thanks for your help. > > On Mon, Apr

Re: [Freesurfer] Optseq2 question- duration of final event

2015-04-20 Thread Dan Goldman
Nevermind, I got it to work! Thanks for your help. On Mon, Apr 20, 2015 at 2:51 PM, Dan Goldman wrote: > When I try that I get the error "cannot execute binary file". > > On Mon, Apr 20, 2015 at 2:46 PM, Douglas Greve > wrote: > >> chmod a+x optseq2 >> >> >> >> >> On 4/20/15 2:13 PM, Dan Goldm

Re: [Freesurfer] Optseq2 question- duration of final event

2015-04-20 Thread Dan Goldman
When I try that I get the error "cannot execute binary file". On Mon, Apr 20, 2015 at 2:46 PM, Douglas Greve wrote: > chmod a+x optseq2 > > > > > On 4/20/15 2:13 PM, Dan Goldman wrote: > > I am having some trouble using this version- when I try to use it in > Terminal, it returns "Permission de

Re: [Freesurfer] Optseq2 question- duration of final event

2015-04-20 Thread Douglas Greve
chmod a+x optseq2 On 4/20/15 2:13 PM, Dan Goldman wrote: I am having some trouble using this version- when I try to use it in Terminal, it returns "Permission denied." Is there something I need to do to be able to use it on my computer? Thanks for your help. On Mon, Apr 20, 2015 at 1:50 PM,

Re: [Freesurfer] Optseq2 question- duration of final event

2015-04-20 Thread Dan Goldman
I am having some trouble using this version- when I try to use it in Terminal, it returns "Permission denied." Is there something I need to do to be able to use it on my computer? Thanks for your help. On Mon, Apr 20, 2015 at 1:50 PM, Douglas Greve wrote: > > This is the most recent version, the

Re: [Freesurfer] Optseq2 question- duration of final event

2015-04-20 Thread Douglas Greve
This is the most recent version, the one that will be part of FS version 6. On 4/20/15 1:40 PM, Dan Goldman wrote: Hi Douglas, Thank you for the quick response. Could you tell me which version of optseq this is? Are there multiple versions of optseq2? On Mon, Apr 20, 2015 at 1:31 PM, Dougl

Re: [Freesurfer] Optseq2 question- duration of final event

2015-04-20 Thread Dan Goldman
Hi Douglas, Thank you for the quick response. Could you tell me which version of optseq this is? Are there multiple versions of optseq2? On Mon, Apr 20, 2015 at 1:31 PM, Douglas Greve wrote: > > Can you try using this version of optseq? > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/

Re: [Freesurfer] Optseq2 question- duration of final event

2015-04-20 Thread Douglas Greve
Can you try using this version of optseq? ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/optseq2 I changed some things that might fix this problem. I ran the command line below with it, and it gave reasonable results for the last null. On 4/20/15 1:22 PM, Dan Goldman wrote: H

[Freesurfer] Optseq2 question- duration of final event

2015-04-20 Thread Dan Goldman
Hello, I am having a problem with optseq2, where the final NULL event is given a much longer duration than the rest of the events. This happens even if I set tnullmax to a lower number- for example, I set tnullmax to 10 seconds, and the final interval came out at 48 seconds. Do you know how to res

[Freesurfer] optseq2 question

2015-03-26 Thread 王琎
> > Dear Doug Greve > Hi, I am glad to write to you. I am a graduate student in Institute of > Psychology, Chinese Academy of Sciences. It is my first time doing fMRI > experiment. Now I meet some difficulties while using Optseq2. I hope you can > help me. Thank you very much. > > The

Re: [Freesurfer] optseq2 question

2008-11-13 Thread Doug Greve
Hongchuan Zhang wrote: > Hi, list, > I am new to optseq2 so I really need advices to my questions. We have > an experiment of 2 factors with36 trials for each factor, and another > 24 null trials. So in total we have 96 trials. We also have 3 random > jitters which make our trials could last for

[Freesurfer] optseq2 question

2008-11-03 Thread Hongchuan Zhang
Hi, list, I am new to optseq2 so I really need advices to my questions. We have an experiment of 2 factors with 36 trials for each factor, and another 24 null trials. So in total we have 96 trials. We also have 3 random jitters which make our trials could last for either 4.6, 5 or 5.4 secon

Re: [Freesurfer] optseq2 question

2007-11-13 Thread Doug Greve
John Herrington wrote: I'm new to optseq and to rapid E-R designs generally. I have a two questions about it. If it helps, here's my (tentative) design - I'm creating a task with 5 conditions (including rest) with a TR of 2320 ms and trial SOA of 4640 ms (my stimuli are on screen for 1 sec o

[Freesurfer] optseq2 question

2007-11-13 Thread John Herrington
I'm new to optseq and to rapid E-R designs generally. I have a two questions about it. If it helps, here's my (tentative) design - I'm creating a task with 5 conditions (including rest) with a TR of 2320 ms and trial SOA of 4640 ms (my stimuli are on screen for 1 sec of this time). 1) I've been

Re: [Freesurfer] optseq2 question about fixing null intervals

2007-08-06 Thread Doug Greve
what do you mean by "allowable null intervals"? If you mean that there needs to be a fixed amount of time between two stimuli, then you cannot use optseq for this. However, you can tell optseq that there are only two stimuli, which each stimulus is a pair. Then you'd have to go back and recod

[Freesurfer] optseq2 question about fixing null intervals

2007-08-03 Thread Denis R
Hello, We're designing a task that has two pairs of events (4 events total). Each pair of events has a pair of allowable null intervals associated with it. Is it possible to use optseq2 to create such a paradigm? Is it appropriate to use optseq2 in this case at all given these constraints? ___