Re: [Freesurfer] Clarification on Interpreting results cont'

2018-03-06 Thread Douglas N. Greve
correct


On 03/06/2018 01:41 PM, Avideh Gharehgazlou wrote:
> Hi,
>
> Thank you so much for the clarification, so values listed under “CWP” 
> column in "mc-z.abs.th13.sig.cluster.summary" file are my corrected 
> p-values to be reported? (in this case having run monte carlo for 
> multiple comparison correction)
>
>
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Re: [Freesurfer] Clarification on interpreting results

2018-03-06 Thread Douglas N. Greve


On 03/06/2018 12:03 PM, Douglas N. Greve wrote:
>
>
> On 03/06/2018 10:14 AM, Avideh Gharehgazlou wrote:
>> Hi,
>>
>> I have a 2 questions regarding properly interpreting results from 
>> QDEC. Will you please clarify the following for me?
>>
>> 1. What is the difference between stats table generated after 
>> correcting for multiple comparisons (i.e. monte carlo), vs the stats 
>> table generated after clicking "find clusters and go to max"? Results 
>> from which stats table should be reported? After searching on the 
>> web, I am still unclear about what exactly "find clusters and go to 
>> max" button does... and whether these are corrected results or not?
> That button just finds clusters an will move the cursor to the maximum 
> value inside the cluster. There is no correction for multiple 
> comparisons with the "find clusters and go to max" button.
>>
>> 2. My understanding is that "CWP" column in stats table represents 
>> p-values of each cluster. However, when I manually convert values in 
>> the "max" column (which I assume are freesurfer p-values reported in 
>> -log(10)), I get different p-values than what are listed in "CWP" 
>> column for each cluster. Again, my question is whether I should 
>> report "CWP" values as my p-values or convert manually myself and 
>> report those?
> The max is the maximum uncorrected vertex-wise significance in the 
> cluster and is unrelated to the clusterwise p-value (CWP).
>>
>> I would really appreciate your help!
>>
>> Thanks so much,
>>
>> Avi
>>
>>
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>>
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>

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