Andy, please remember to post to the FS list, thanks. As for your
question, this is a bug in mri_glmfit-sim that hard codes the allowable
thresholds. I've attached a version that should work with 1.6.
On 09/14/2017 10:06 AM, Jahn, Andrew wrote:
Thanks again; I was able to create new
.mgh.harvard.edu>
> *Sent:* Thursday, September 7, 2017 5:55:30 PM
> *To:* freesurfer@nmr.mgh.harvard.edu
> *Subject:* Re: [Freesurfer] Cluster-Defining Threshold of p=0.025
> If you want to use that threshold, you will have to create tables for
> that threshold using
edu>
Sent: Thursday, September 7, 2017 5:55:30 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Cluster-Defining Threshold of p=0.025
If you want to use that threshold, you will have to create tables for
that threshold using mri_mcsim. See
https://surfer.nmr.mgh.harvar
If you want to use that threshold, you will have to create tables for
that threshold using mri_mcsim. See
https://surfer.nmr.mgh.harvard.edu/fswiki/BuildYourOwnMonteCarlo
Alternatively, I have a version of mri_glmfit-sim that will run
permutation with non-orthogonal designs.
