Re: [Freesurfer] Correcting defect problem after checking skull stripped and editing wm.mgz

External Email - Use Caution Hi Bruce Thanks so much for your quick reply. I had overlaid the ?h.defect_labels on the inflated.nofix and orig.nofix. I adjusted the threshold to focus on the largest defect. Although I could look at the defect, I couldn't figure how to fix it manual

Re: [Freesurfer] Correcting defect problem after checking skull stripped and editing wm.mgz

Hi Jiun-Wei have you looked at the ?h.defect_labels overlaid on the inflated.nofix and orig.nofix surfaces? That will tell you where the defect is that is causing you trouble. If you have lesions they may be the source of the issue. If you can't sort it out you can tar and gzip the entire subj