Re: [Freesurfer] Generating Surfaces from Labels

2017-08-11 Thread Zach Humphrey
Hello Dr. Fischl, Thanks for the feedback. Can the flattened patches be "re-inflated" into surface files again after being flattened? I am also continuing to run into the issue with the label2vol function where I end up with a volume that is completely filled. The steps I have been following to r

Re: [Freesurfer] Generating Surfaces from Labels

2017-08-09 Thread Douglas N Greve
On 08/08/2017 03:42 PM, Zach Humphrey wrote: > Hello All, > > I have been attempting to convert Label files generated using > mri_annotation2label into surface files for use in external programs. > In order to do this I first need to convert the label files into > freesurfer binary. I have att

Re: [Freesurfer] Generating Surfaces from Labels

2017-08-08 Thread Bruce Fischl
Hi Zach I think if you cut and flatten the cortical part of the surfaces, convert tha .annot files to separate label files, you can then use label2flat on each label to generate a flattened patch that is just taht label. I haven't used it in years (decades?), but I think it should work cheer