Re: [Freesurfer] Remapping Volume

2016-10-12 Thread Crawford, Anna
:53 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Remapping Volume Try adding --projfrac 0.5 On 10/12/2016 11:29 AM, Crawford, Anna wrote: > I did: > > mri_vol2surf --src > /mnt/netScratch/crawforda/BrainStem/study11074/S2sdt/segfs/mri/aparc+asegRMnn.mgz >

Re: [Freesurfer] Remapping Volume

2016-10-12 Thread Douglas N Greve
___ > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl > [fis...@nmr.mgh.harvard.edu] > Sent: Wednesday, October 12, 2016 10:47 AM > To: Freesurfer support list > Subject: Re: [Freesurfer] Remapping

Re: [Freesurfer] Remapping Volume

2016-10-12 Thread Bruce Fischl
nmr.mgh.harvard.edu] > Sent: Tuesday, October 11, 2016 10:29 PM > To: Freesurfer support list > Subject: Re: [Freesurfer] Remapping Volume > > what was your vol2surf command line? Make sure that it is using nearest > neighbor interpolation > On Tue, 11 Oct 2016, Crawford, Anna w

Re: [Freesurfer] Remapping Volume

2016-10-12 Thread Crawford, Anna
of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Tuesday, October 11, 2016 10:29 PM To: Freesurfer support list Subject: Re: [Freesurfer] Remapping Volume what was your vol2surf command line? Make sure that it is using nearest neighbor interpolation On Tue, 11 Oct 2016, Crawford, Anna wrote: &g

Re: [Freesurfer] Remapping Volume

2016-10-11 Thread Bruce Fischl
what was your vol2surf command line? Make sure that it is using nearest neighbor interpolation On Tue, 11 Oct 2016, Crawford, Anna wrote: > Hi, > > I am trying to remap a volume. I am using aparc+aseg.mgz volume. I loaded it > into Matlab using load_mgh. In Matlab I remap the volume to