Re: [Freesurfer] Untar and sh files in dev version

2018-08-13 Thread Hoopes, Andrew 
And the downloads have finished successfully each time? Are you definitely 
grabbing the tarball from 
https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev/freesurfer-linux-centos6_x86_64-dev.tar.gz?
Andrew


From:  on behalf of Schumman Resonance 

Reply-To: FS Help 
Date: Saturday, August 11, 2018 at 2:55 PM
To: FS Help 
Subject: Re: [Freesurfer] Untar and sh files in dev version


External Email - Use Caution
Thanks Andrew. I have done that twice now...

On Sat, Aug 11, 2018 at 10:21 AM, Hoopes, Andrew 
mailto:ahoo...@mgh.harvard.edu>> wrote:
Hi K, your original error is usually due to an incomplete download. You might 
want to try redownloading and untaring again
Best,
Andrew

From: 
mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
 on behalf of Schumman Resonance 
mailto:schumm...@gmail.com>>
Reply-To: FS Help 
mailto:freesurfer@nmr.mgh.harvard.edu>>
Date: Saturday, August 11, 2018 at 9:24 AM
To: FS Help 
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] Untar and sh files in dev version


External Email - Use Caution
Thanks for your response, but I already have the stable release version in 
another system.
What I'd like to do now is to run the development version.
Thanks,
K


On Sat, Aug 11, 2018 at 1:22 AM, Dicamillo, Robert 
mailto:rdicami...@mgh.harvard.edu>> wrote:
Hello K,

Can you try downloading the 6.0.0 release archive from the web site (please 
note it is 4.8G),

freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz<ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz>

Then you will need 5 GB of space to uncompress it.  I would add the v option so 
you can see the expansion in progress,

$ tar zxvpf  freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz

- Rob


On Aug 11, 2018, at 2:55 AM, Schumman Resonance 
mailto:schumm...@gmail.com>> wrote:


External Email - Use Caution

Thanks for your response.
I run the command you suggested and this is what I got:
freesurfer/average/mult-comp-cor/fsaverage_sym/rh/cortex/fwhm04/pos/th33/mc-z.csd:
 (Empty error message)
tar: Error exit delayed from previous errors.

Also, still no .sh files...

Best,
K

On Fri, Aug 10, 2018 at 7:52 PM, Dicamillo, Robert 
mailto:rdicami...@mgh.harvard.edu>> wrote:
Hello Schumman,

Try the following command on the tar archive (cut and paste it if you like)

$ tar zxpf freesurfer-linux-centos6_x86_64-dev.tar.gz

and then take a look at the files.

- Rob

On Aug 10, 2018, at 10:25 PM, Schumman Resonance 
mailto:schumm...@gmail.com>> wrote:


External Email - Use Caution

Hi,

Couple of newbie questions. I downloaded the dev version of freesurfer  and did:
tar xvzf
freesurfer-linux-centos6_x86_64-dev.tar.gz

to get


gzip: stdin: unexpected end of file
tar: Unexpected EOF in archive
tar: Unexpected EOF in archive
tar: Error is not recoverable: exiting now



Also, when I ls the folder I couldn't see the SetUpFreesurfer.sh and 
SurferEnv.sh only the csh files.

Any pointers how to solve these would be appreciated.

Thanks,
S
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Re: [Freesurfer] Untar and sh files in dev version

2018-08-11 Thread Schumman Resonance 
External Email - Use Caution

Thanks Andrew. I have done that twice now...

On Sat, Aug 11, 2018 at 10:21 AM, Hoopes, Andrew 
wrote:

> Hi K, your original error is usually due to an incomplete download. You
> might want to try redownloading and untaring again
>
> Best,
>
> Andrew
>
>
>
> *From: * on behalf of Schumman
> Resonance 
> *Reply-To: *FS Help 
> *Date: *Saturday, August 11, 2018 at 9:24 AM
> *To: *FS Help 
> *Subject: *Re: [Freesurfer] Untar and sh files in dev version
>
>
>
> *External Email - Use Caution*
>
> Thanks for your response, but I already have the stable release version in
> another system.
>
> What I'd like to do now is to run the development version.
>
> Thanks,
>
> K
>
>
>
>
>
> On Sat, Aug 11, 2018 at 1:22 AM, Dicamillo, Robert <
> rdicami...@mgh.harvard.edu> wrote:
>
> Hello K,
>
>
>
> Can you try downloading the 6.0.0 release archive from the web site
> (please note it is 4.8G),
>
>
>
> freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz
> <ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz>
>
>
>
> Then you will need 5 GB of space to uncompress it.  I would add the v
> option so you can see the expansion in progress,
>
>
>
> $ tar zxvpf  freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz
>
>
>
> - Rob
>
>
>
>
>
> On Aug 11, 2018, at 2:55 AM, Schumman Resonance 
> wrote:
>
>
>
> *External Email - Use Caution*
>
>
>
> Thanks for your response.
>
> I run the command you suggested and this is what I got:
>
> freesurfer/average/mult-comp-cor/fsaverage_sym/rh/cortex/fwhm04/pos/th33/mc-z.csd:
> (Empty error message)
>
> tar: Error exit delayed from previous errors.
>
>
>
> Also, still no .sh files...
>
>
>
> Best,
>
> K
>
>
>
> On Fri, Aug 10, 2018 at 7:52 PM, Dicamillo, Robert <
> rdicami...@mgh.harvard.edu> wrote:
>
> Hello Schumman,
>
>
>
> Try the following command on the tar archive (cut and paste it if you like)
>
>
>
> $ tar zxpf freesurfer-linux-centos6_x86_64-dev.tar.gz
>
>
>
> and then take a look at the files.
>
>
>
> - Rob
>
>
>
> On Aug 10, 2018, at 10:25 PM, Schumman Resonance 
> wrote:
>
>
>
> *External Email - Use Caution*
>
>
>
> Hi,
>
>
>
> Couple of newbie questions. I downloaded the dev version of freesurfer
> and did:
>
> tar xvzf
>
> freesurfer-linux-centos6_x86_64-dev.tar.gz
>
>
>
> to get
>
>
>
>
>
> gzip: stdin: unexpected end of file
>
> tar: Unexpected EOF in archive
>
> tar: Unexpected EOF in archive
>
> tar: Error is not recoverable: exiting now
>
>
>
>
>
>
>
> Also, when I ls the folder I couldn't see the SetUpFreesurfer.sh and
> SurferEnv.sh only the csh files.
>
>
>
> Any pointers how to solve these would be appreciated.
>
>
>
> Thanks,
>
> S
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
>
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> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
>
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
>
> ___
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> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patie

Re: [Freesurfer] Untar and sh files in dev version

2018-08-11 Thread Hoopes, Andrew 
Hi K, your original error is usually due to an incomplete download. You might 
want to try redownloading and untaring again
Best,
Andrew

From:  on behalf of Schumman Resonance 

Reply-To: FS Help 
Date: Saturday, August 11, 2018 at 9:24 AM
To: FS Help 
Subject: Re: [Freesurfer] Untar and sh files in dev version


External Email - Use Caution
Thanks for your response, but I already have the stable release version in 
another system.
What I'd like to do now is to run the development version.
Thanks,
K


On Sat, Aug 11, 2018 at 1:22 AM, Dicamillo, Robert 
mailto:rdicami...@mgh.harvard.edu>> wrote:
Hello K,

Can you try downloading the 6.0.0 release archive from the web site (please 
note it is 4.8G),

freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz<ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz>

Then you will need 5 GB of space to uncompress it.  I would add the v option so 
you can see the expansion in progress,

$ tar zxvpf  freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz

- Rob


On Aug 11, 2018, at 2:55 AM, Schumman Resonance 
mailto:schumm...@gmail.com>> wrote:


External Email - Use Caution

Thanks for your response.
I run the command you suggested and this is what I got:
freesurfer/average/mult-comp-cor/fsaverage_sym/rh/cortex/fwhm04/pos/th33/mc-z.csd:
 (Empty error message)
tar: Error exit delayed from previous errors.

Also, still no .sh files...

Best,
K

On Fri, Aug 10, 2018 at 7:52 PM, Dicamillo, Robert 
mailto:rdicami...@mgh.harvard.edu>> wrote:
Hello Schumman,

Try the following command on the tar archive (cut and paste it if you like)

$ tar zxpf freesurfer-linux-centos6_x86_64-dev.tar.gz

and then take a look at the files.

- Rob

On Aug 10, 2018, at 10:25 PM, Schumman Resonance 
mailto:schumm...@gmail.com>> wrote:


External Email - Use Caution

Hi,

Couple of newbie questions. I downloaded the dev version of freesurfer  and did:
tar xvzf
freesurfer-linux-centos6_x86_64-dev.tar.gz


to get




gzip: stdin: unexpected end of file
tar: Unexpected EOF in archive
tar: Unexpected EOF in archive
tar: Error is not recoverable: exiting now




Also, when I ls the folder I couldn't see the SetUpFreesurfer.sh and 
SurferEnv.sh only the csh files.


Any pointers how to solve these would be appreciated.


Thanks,
S
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The information in this e-mail is intended only for the person to whom it is
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Re: [Freesurfer] Untar and sh files in dev version

2018-08-11 Thread Schumman Resonance 
External Email - Use Caution

Thanks for your response, but I already have the stable release version in
another system.
What I'd like to do now is to run the development version.
Thanks,
K


On Sat, Aug 11, 2018 at 1:22 AM, Dicamillo, Robert <
rdicami...@mgh.harvard.edu> wrote:

> Hello K,
>
> Can you try downloading the 6.0.0 release archive from the web site
> (please note it is 4.8G),
>
> freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz
> 
>
> Then you will need 5 GB of space to uncompress it.  I would add the v
> option so you can see the expansion in progress,
>
> $ tar zxvpf  freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz
>
> - Rob
>
>
> On Aug 11, 2018, at 2:55 AM, Schumman Resonance 
> wrote:
>
> External Email - Use Caution
>
> Thanks for your response.
> I run the command you suggested and this is what I got:
> freesurfer/average/mult-comp-cor/fsaverage_sym/rh/cortex/fwhm04/pos/th33/mc-z.csd:
> (Empty error message)
> tar: Error exit delayed from previous errors.
>
> Also, still no .sh files...
>
> Best,
> K
>
> On Fri, Aug 10, 2018 at 7:52 PM, Dicamillo, Robert <
> rdicami...@mgh.harvard.edu> wrote:
>
>> Hello Schumman,
>>
>> Try the following command on the tar archive (cut and paste it if you
>> like)
>>
>> $ tar zxpf freesurfer-linux-centos6_x86_64-dev.tar.gz
>>
>> and then take a look at the files.
>>
>> - Rob
>>
>> On Aug 10, 2018, at 10:25 PM, Schumman Resonance 
>> wrote:
>>
>> External Email - Use Caution
>>
>> Hi,
>>
>> Couple of newbie questions. I downloaded the dev version of freesurfer
>> and did:
>> tar xvzf
>> freesurfer-linux-centos6_x86_64-dev.tar.gz
>>
>> to get
>>
>>
>> gzip: stdin: unexpected end of file
>> tar: Unexpected EOF in archive
>> tar: Unexpected EOF in archive
>> tar: Error is not recoverable: exiting now
>>
>>
>>
>> Also, when I ls the folder I couldn't see the SetUpFreesurfer.sh and
>> SurferEnv.sh only the csh files.
>>
>> Any pointers how to solve these would be appreciated.
>>
>> Thanks,
>> S
>> ___
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>>
>> ___
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>> The information in this e-mail is intended only for the person to whom it
>> is
>> addressed. If you believe this e-mail was sent to you in error and the
>> e-mail
>> contains patient information, please contact the Partners Compliance
>> HelpLine at
>> http://www.partners.org/complianceline . If the e-mail was sent to you
>> in error
>> but does not contain patient information, please contact the sender and
>> properly
>> dispose of the e-mail.
>>
>>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
> ___
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> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
>
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addressed. If you believe this e-mail was sent to you in error and the e-mail
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but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] Untar and sh files in dev version

2018-08-11 Thread Dicamillo, Robert 
Hello K,

Can you try downloading the 6.0.0 release archive from the web site (please 
note it is 4.8G),

freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz

Then you will need 5 GB of space to uncompress it.  I would add the v option so 
you can see the expansion in progress,

$ tar zxvpf  freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz

- Rob


On Aug 11, 2018, at 2:55 AM, Schumman Resonance 
mailto:schumm...@gmail.com>> wrote:


External Email - Use Caution

Thanks for your response.
I run the command you suggested and this is what I got:
freesurfer/average/mult-comp-cor/fsaverage_sym/rh/cortex/fwhm04/pos/th33/mc-z.csd:
 (Empty error message)
tar: Error exit delayed from previous errors.

Also, still no .sh files...

Best,
K

On Fri, Aug 10, 2018 at 7:52 PM, Dicamillo, Robert 
mailto:rdicami...@mgh.harvard.edu>> wrote:
Hello Schumman,

Try the following command on the tar archive (cut and paste it if you like)

$ tar zxpf freesurfer-linux-centos6_x86_64-dev.tar.gz

and then take a look at the files.

- Rob

On Aug 10, 2018, at 10:25 PM, Schumman Resonance 
mailto:schumm...@gmail.com>> wrote:


External Email - Use Caution

Hi,

Couple of newbie questions. I downloaded the dev version of freesurfer  and did:
tar xvzf
freesurfer-linux-centos6_x86_64-dev.tar.gz

to get



gzip: stdin: unexpected end of file
tar: Unexpected EOF in archive
tar: Unexpected EOF in archive
tar: Error is not recoverable: exiting now



Also, when I ls the folder I couldn't see the SetUpFreesurfer.sh and 
SurferEnv.sh only the csh files.

Any pointers how to solve these would be appreciated.

Thanks,
S
___
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https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
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dispose of the e-mail.


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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
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but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] Untar and sh files in dev version

2018-08-11 Thread Schumman Resonance 
External Email - Use Caution

Thanks for your response.
I run the command you suggested and this is what I got:

freesurfer/average/mult-comp-cor/fsaverage_sym/rh/cortex/fwhm04/pos/th33/mc-z.csd:
(Empty error message)

tar: Error exit delayed from previous errors.

Also, still no .sh files...

Best,
K

On Fri, Aug 10, 2018 at 7:52 PM, Dicamillo, Robert <
rdicami...@mgh.harvard.edu> wrote:

> Hello Schumman,
>
> Try the following command on the tar archive (cut and paste it if you like)
>
> $ tar zxpf freesurfer-linux-centos6_x86_64-dev.tar.gz
>
> and then take a look at the files.
>
> - Rob
>
> On Aug 10, 2018, at 10:25 PM, Schumman Resonance 
> wrote:
>
> External Email - Use Caution
>
> Hi,
>
> Couple of newbie questions. I downloaded the dev version of freesurfer
> and did:
> tar xvzf
> freesurfer-linux-centos6_x86_64-dev.tar.gz
>
> to get
>
>
> gzip: stdin: unexpected end of file
> tar: Unexpected EOF in archive
> tar: Unexpected EOF in archive
> tar: Error is not recoverable: exiting now
>
>
>
> Also, when I ls the folder I couldn't see the SetUpFreesurfer.sh and
> SurferEnv.sh only the csh files.
>
> Any pointers how to solve these would be appreciated.
>
> Thanks,
> S
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Re: [Freesurfer] Untar and sh files in dev version

2018-08-10 Thread Dicamillo, Robert 
Hello Schumman,

Try the following command on the tar archive (cut and paste it if you like)

$ tar zxpf freesurfer-linux-centos6_x86_64-dev.tar.gz

and then take a look at the files.

- Rob

On Aug 10, 2018, at 10:25 PM, Schumman Resonance 
mailto:schumm...@gmail.com>> wrote:


External Email - Use Caution

Hi,

Couple of newbie questions. I downloaded the dev version of freesurfer  and did:
tar xvzf
freesurfer-linux-centos6_x86_64-dev.tar.gz

to get



gzip: stdin: unexpected end of file
tar: Unexpected EOF in archive
tar: Unexpected EOF in archive
tar: Error is not recoverable: exiting now



Also, when I ls the folder I couldn't see the SetUpFreesurfer.sh and 
SurferEnv.sh only the csh files.

Any pointers how to solve these would be appreciated.

Thanks,
S
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contains patient information, please contact the Partners Compliance HelpLine at
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