Re: [Freesurfer] VBM by freesurfer

2018-12-18 Thread Maurizio Bergamino
External Email - Use Caution Thank you! Il giorno mar 18 dic 2018 alle ore 11:43 Bruce Fischl < fis...@nmr.mgh.harvard.edu> ha scritto: > Hi Maurizio > > the orig.mgz has been converted to 1 byte/pixel and 256^3 1mm isotropic. > You can use mri_convert to go back to your original

Re: [Freesurfer] VBM by freesurfer

2018-12-18 Thread Bruce Fischl
Hi Maurizio the orig.mgz has been converted to 1 byte/pixel and 256^3 1mm isotropic. You can use mri_convert to go back to your original data space via: mri_convert -rl orig/001.mgz cheers Bruce On Tue, 18 Dec 2018, Maurizio Bergamino wrote: External Email - Use CautionĀ 

Re: [Freesurfer] VBM

2017-08-09 Thread Douglas N Greve
we do not support vbm processing On 08/08/2017 06:21 PM, Shane S wrote: > Hello Experts, > > Can we do VBM in MNI template using the outputs from recon all? Which > file should I be using? And how do I smooth the volumes? > > Thank you for the tips! > > -- > Shane S > > > __

Re: [Freesurfer] VBM in SPM and FreeSurfer

2011-02-18 Thread Bruce Fischl
Hi Lijie while SPM (and others) call it "density", it's really just a smoothing of the labeled voxels over space. We tools that would allow you to do the same thing with FS segmentations, but haven't ever put them together into a pipeline as the neurobiological interpretation of such a map is v