Re: [Freesurfer] dwi.ecclog file

2018-06-13 Thread Daumail, Loic Jean
___ From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Yendiki, Anastasia [ayend...@mgh.harvard.edu] Sent: Tuesday, June 12, 2018 5:40 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] dwi.ecclog file Hi Loic - The c

Re: [Freesurfer] dwi.ecclog file

2018-06-12 Thread Yendiki, Anastasia
Hi Loic - The command that computes the motion measures is dmri_motion, and it can take either the eddy_correct or eddy format as input. The former format contains affine registration matrices with respect to the reference frame (which usually is the first b=0). The latter format contains the