I believe the problem is that they live in different voxel spaces (Doug, can
you please clarify?)
Cheers,
/Eugenio
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
From: on behalf of Marcel Heers
Reply-To: Freesurfer support list
Date: Wednesday, 4 December 2019 at 17:10
To: "Freesurfer@nmr.mgh.harvard.edu"
Subject: [Freesurfer] hippocampal subfields as masks for mri_segstats
External Email - Use Caution
Dear all, (dear Eugenio),
I would like to use hippocampal subfields as masks for mri_segstats to retrieve
intensity values. I am having problems loading the subfields file although it
works fine with aseg.mgz.
Does anyone know the cause?
Thank you in advance!
Best regards
Marcel
mri_segstats --seg $SUBJECTS_DIR/test/mri/aseg.mgz --ctab-default --sum
output.txt --in $SUBJECTS_DIR/test/mri/T1.mgz
mri_segstats --seg $SUBJECTS_DIR/test/mri/lh.hippoAymgLabels-T1.v21.HBT.mgz
--sum output.txt --in $SUBJECTS_DIR/test/mri/T1.mgz
ERROR: loading $SUBJECTS_DIR/test/mri/lh.hippoAymgLabels-T1.v21.HBT.mgz
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