Re: [Freesurfer] resting state motion censoring

I think that will work On 4/23/18 3:08 PM, Adam Martersteck wrote: Hi Freesurfer team & Doug, Thought I would check in again about censoring volumes and using fcseedcor. I was thinking about if it hasn't been incorporated yet -- could I create my own first level covariate .dat file and

Re: [Freesurfer] resting state motion censoring

External Email - Use Caution Hi Freesurfer team & Doug, Thought I would check in again about censoring volumes and using fcseedcor. I was thinking about if it hasn't been incorporated yet -- could I create my own first level covariate .dat file and run fcseedcor on a per subject

Re: [Freesurfer] resting state motion censoring

Hi Freesurfer team & Doug, Just thought I'd check back in as you had asked! Any thoughts on censoring resting state volumes for fcseedcorr? Thanks, Adam On Thu, Feb 15, 2018 at 12:57 PM, Douglas N Greve wrote: > Currently there is no way to do this. But it might

Re: [Freesurfer] resting state motion censoring

Currently there is no way to do this. But it might not be hard to add. If I don't get back in a couple of weeks, send me a reminder. On 02/14/2018 12:13 PM, Adam Martersteck wrote: > Just a quick follow-up question, > For FD/DVARS or other "censoring" criteria -- using -tpexclusion > worked

Re: [Freesurfer] resting state motion censoring

Just a quick follow-up question, For FD/DVARS or other "censoring" criteria -- using -tpexclusion worked great for surface based analysis with mkanalsysis and selxavg3. Is there a way to do this for seed-to-seed analysis (fcseedcor)? Thanks! On Thu, Jan 25, 2018 at 4:00 PM, Douglas N Greve

Re: [Freesurfer] resting state motion censoring

Yes,you need a time point exclusion file (-tpexclude filename option to mkanalysis-sess). Run mkanalysis with -help to get more info on how to create it. On 01/25/2018 04:43 PM, Adam Martersteck wrote: > Hi Freesurer experts, > > I’m looking to censor (drop volumes) from my resting state fMRI