Dear Nate, Yes, you are right, for some reason, we couldn't cd to the folder. It is fixed and I restart the Galaxy. The only thing is that it needs about 10 minutes to start. I remembered it is a little fast last week. Is there any problem? Anyway, Galaxy works.
Thanks, Yan On Mon, Feb 14, 2011 at 8:49 AM, Nate Coraor <n...@bx.psu.edu> wrote: > Yan Luo wrote: > > Dear Nate, > > > > Thanks for your quick response, I got "sever error". and just killed the > > process. When I ran activate as follows and can't active it: > > > > > > kangtu@dscbc-compute:~$ . > > /home/kangtu/data/tools/galaxy-dist/galaxy_env/bin/activate > > bash: /home/kangtu/data/tools/galaxy-dist/galaxy_env/bin/activate: Stale > NFS > > file handle > > kangtu@dscbc-compute:~$ > > It looks like the NFS mount on which Galaxy lives has gone bad, possibly > due to an error with the NFS server. I suggest contacting a local > system administrator for assistance. > > --nate > > > > > > > Any suggestion will be appreciate. > > > > Best Wishes, > > > > Yan > > > > > > > > On Mon, Feb 14, 2011 at 8:43 AM, Nate Coraor <n...@bx.psu.edu> wrote: > > > > > Yan Luo wrote: > > > > Dear Nate, > > > > > > > > I have a new problem, last week, I restarted the Galaxy, but it > worked > > > well. > > > > This morning, I found I can't start it from browser, but when I check > "ps > > > > auxwww|grep python", I still find it is running, what is problem? > > > > > > What happens when you try to connect via a browser? Is an error > message > > > displayed? Connection timeout? > > > > > > > > > > > kangtu 24468 0.3 0.0 961592 104296 pts/30 Sl+ Feb11 13:43 > python > > > > ./scripts/paster.py serve universe_wsgi.ini > > > > > > If you reconnect to your screen session and take a look at the output > > > from the Galaxy server, there may be error message displayed which > would > > > explain what the problem is. > > > > > > --nate > > > > > > > > > > > > > > > Looking forward to hearing from you. > > > > > > > > Best Wishes, > > > > > > > > yan > > > > > > > > On Fri, Feb 11, 2011 at 11:16 AM, Yan Luo <luoma...@gmail.com> > wrote: > > > > > > > > > Dear Nate, > > > > > > > > > > I just used "screen", and restarted the galaxy, it works. It is > > > perfect, > > > > > and I also found that some features can't be used before, when I > > > restart it, > > > > > everything is fine. > > > > > > > > > > Have a wonderful weekend! > > > > > > > > > > Best Wishes, > > > > > > > > > > Yan > > > > > > > > > > > > > > > > > > >
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