Re: [galaxy-dev] divide fq into 2

2011-03-09 Thread Ry4an Brase
On Tue, Mar 08, 2011 at 11:15:44PM -0500, Musa A. Hassan wrote: Yes I can't get the file into galaxy at all. Am uploading from a file path. the file is 35mb. When you say uploading from a filepath are you using the administrator-only functionality explained here:

Re: [galaxy-dev] setup.sh missing

2011-03-09 Thread Enis Afgan
Hi Curtis, setup.sh has been removed from the installation process, as discussed in this thread: http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-March/004588.html On Wed, Mar 9, 2011 at 2:12 PM, Curt Palm cp...@stanford.edu wrote: I just cloned the current release version of galaxy: hg

Re: [galaxy-dev] [galaxy-user] irc channel for galaxy

2011-03-09 Thread Dave Clements
Hi George, Thanks to your suggestion and work by Nate Coraor, Galaxy now has an IRC channel: Server: irc.freenode.net Channel: #galaxyproject This is an informal online gathering place for the Galaxy community to post questions and help each other out. Note that while IRC is conducive

Re: [galaxy-dev] galaxy-cloud display data in browser broken

2011-03-09 Thread Isabelle Phan
Uploaded data from Biomart and the data is displayed correctly in the middle pane. I deleted all datasets in the history except the first one (a fastq file), and it now displays correctly too! I upload a fasta file: it does not display. Could this be a bug with fasta data? Isabelle --

[galaxy-dev] Enabling iterative test-driven development of tools

2011-03-09 Thread John Chilton
Hello, The current tool testing options provided by Galaxy are excellent for verifying that Galaxy is functioning properly and that tools provide reproducible results. However, I believe there are two related shortcomings to the current Galaxy approach, and I would like to propose a solution for