Re: [galaxy-dev] Could anyone body tell me why our C program do not work in galaxy

2011-04-25 Thread Peter Cock
2011/4/25 liyanhui607 liyanhui...@163.com: Thank you  very much! After I have added it to the path, it can work now. Best Wishes! Yan-Hui Li Oh good. Peter P.S. Please keep the mailing list on replies. ___ Please keep all replies on

Re: [galaxy-dev] DB access and passowrd field

2011-04-25 Thread Jennifer Jackson
Hello Alex, If you want to keep your primary account name private (that is all users would see in a shared link to a history or page), then the best suggestion is to create another account that you use for publication purposes. Hopefully this helps, Best, Jen Galaxy team On 3/19/11 2:22

Re: [galaxy-dev] MarkupSafe egg cannot be fetched

2011-04-25 Thread Kanwei Li
Thanks, fixed on trunk On Sat, Apr 23, 2011 at 7:05 PM, Edward Kirton eskir...@lbl.gov wrote: hello, after pulling the latest changes from galaxy-central, i get the following error: WARNING:galaxy.eggs:Warning: MarkupSafe (a dependent egg of Mako) cannot be fetched $ python

[galaxy-dev] Question on finding external_filename and _extra_files_path from psql DB.

2011-04-25 Thread Vipin TS
Dear Galaxy Team, As a part of in-house automated cleaning of data set from our production galaxy service, I am finding difficulty to get the galaxy assigned file name (galaxy-root/database/001/dataset_001.dat) for each data set from the corresponding database. We are using PostgreSQL and when I

Re: [galaxy-dev] substitute or replace a value?

2011-04-25 Thread Jennifer Jackson
Hello David, There are tools to select data based on defined attributes or to perform calculations on existing data (Text Manipulation, Filter and Sort), but as such no direct user-defined substitution tools. Very sorry for any inconvenience, Best, Jen Galaxy team On 2/23/11 9:26 AM,