[galaxy-dev] Problem with Torque/Maui

2011-05-04 Thread Marco Moretto
StartPriority: 1 cannot select job 29 for partition DEFAULT (non-idle state 'Hold') and finally the tracejob reports /var/spool/torque/server_priv/accounting/20110504: Permission denied /var/spool/torque/mom_logs/20110504: No such file or directory /var/spool/torque/sched_logs/20110504: No such file

[galaxy-dev] Reciprocal Best Hits (RBH) from BLAST tabular output

2011-05-04 Thread Peter Cock
Hi all, I mentioned just over a month ago that I had written a Galaxy tool to do find Reciprocal Best Hits (RBH) from BLAST tabular output or similar (e.g. Bill Pearson's FASTA tabular output). http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-March/004799.html

Re: [galaxy-dev] Display BAM with IGV

2011-05-04 Thread Dave Walton
Could someone who has successfully gotten the IGV tool to work using NGINX as your proxy, tell me if there was anything specific they needed to do with their NGINX or galaxy config to get it working? Thanks, Dave On 4/27/11 9:07 PM, Dave Walton dave.wal...@jax.org wrote: I’m getting this

Re: [galaxy-dev] python2.6?

2011-05-04 Thread Nate Coraor
Yamshchikov, Vladimir wrote: Hello all, If this question is not for this list, please advise. Both my RHEL55 and SL55 are based on python 2.4.3 - how I can add python 2.6 support for Galaxy without screwing up OS? I had both 2.4 and 2.6 installed, by python -V returns only 2.4.3. When

[galaxy-dev] Restoring galaxy database return few empty tables.

2011-05-04 Thread Vipin TS
Dear Galaxy Team, I am switching our Galaxy production service to a new machine, We are using Postgres as database server. The existing database belongs to postgres version 8.3 and I took my instance's dump using postgres version 8.4. I am able to restore my database on postgres 8.4, Except few