Re: [galaxy-dev] microarray NGS

2011-11-18 Thread Ivan Merelli
Dear Eric, thank you for your answer. Your workaround works for the pheno file. A related question is: the affybatch and the eset file formats require to upload two files (rispectively the pheno and the eset/affybatch). Is it normal to have finally only the pheno one in the History? I. Hi

Re: [galaxy-dev] Name your own tool's output?

2011-11-18 Thread Ross
Hi Eric, I have no current resources or active users for microarray development so I can't contribute much and although the rgenetics code works fine with galaxy central the rexpression code is way out of date - which is why the metadata handling is so broken. There are ongoing problems in galaxy

[galaxy-dev] error in downloading bai files using shared history link

2011-11-18 Thread Shantanu Pavgi
Hi, We are getting following error when a user tries to download bam index file (bai) files using a shared history link of following pattern - ' https://galaxy.mydomain/u/user1/h/awesome-analysis '. We are using external authentication and latest galaxy-dist code in our set up. {{{ Error

[galaxy-dev] Delete toolshed repository

2011-11-18 Thread Chorny, Ilya
I want to delete a test repository I created on http://toolshed.g2.bx.psu.edu/repository?webapp=community. Is that possible? Thanks, Ilya Ilya Chorny Ph.D. Bioinformatics Scientist I Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Work: 858.202.4582 Email:

Re: [galaxy-dev] error in downloading bai files using shared history link

2011-11-18 Thread Shantanu Pavgi
Thanks for the fix Jeremy. -- Shantanu. On Nov 18, 2011, at 12:58 PM, Jeremy Goecks wrote: Shantanu, This is a bug and is fixed in galaxy-central changeset ccbee8d11a6a : https://bitbucket.org/galaxy/galaxy-central/changeset/ccbee8d11a6a/ Best, J. On Nov 18, 2011, at 12:37 PM, Shantanu