On Thu, Feb 9, 2012 at 2:57 AM, Fields, Christopher J
cjfie...@illinois.edu wrote:
Forgot to add, but this also seems tied to the same problem
Ryan's describing. IIRC Galaxy also runs 'samtools sort' after
certain jobs, correct?
chris
This sounds like part of the BAM grooming (assuming
Hi there
I recently wrote some code to run Galaxy jobs as a different user, and
was just merging my codebase (https://bitbucket.org/pvanheus/galaxy)
with galaxy-central when I noticed that code doing the same thing is now
part of galaxy-central. The code in galaxy-central is more
straightforward
On Feb 8, 2012, at 1:00 AM, Huayan Gao wrote:
Dear Sir or Madam,
I am installing a galaxy server on CentOS with UCSC Genome Browser mirror
site. The mirror site works well. I installed the galaxy in the same server.
Now my question is: how to set up httpd.conf file so I can access both
I tried to install the GMAP from the main toolshed, but I am getting this error when I actually try to run the GSNAP/GMAP toolsIt seems that there is a problem with the definition of the datatypes...When I check the paster.log it does complain a little, when loading GMAP stuff, but it seems just a
Hello,
I was recently adjusting advanced parameters when running Tophat in Galaxy
and noticed that when advanced parameters are used, every field is
converted and submitted as command line parameter to the tool at runtime.
Without changing any of the default values I get a different tophat result
Hi All,
Apologies for resurrecting an old thread, but an HTML5 chunk uploader as
Hyunsoo previously suggested would actually be very useful for my organisation,
in terms of streamlining our workflow for less technically able users. I was
wondering if there was any intention to include
