Hi,
I am currently working on a workflow with some custom tools, and one of
these tools has to create very big temporary files (like 45Go big).
As this workflow will be used on a lot of file at the same time, I have to
keep it from running more than once or twice at the same time (the other
On Tue, May 13, 2014 at 11:11 AM, Guillaume Penderia
g.pende...@gmail.com wrote:
Hi,
I am currently working on a workflow with some custom tools, and one of
these tools has to create very big temporary files (like 45Go big).
As this workflow will be used on a lot of file at the same time, I
Hi Guillaume,
you can set a limit for concurrent_jobs in job_conf.xml file. Please
have a look at the job_conf.xml.sample_advanced file for more information.
Cheers,
Bjoern
Am 13.05.2014 12:11, schrieb Guillaume Penderia:
Hi,
I am currently working on a workflow with some custom tools,
Peter I am not using a cluster, I am on a big computer with a lot of RAM.
Plus I wouldn't know how to configure this, but thank you anyway !
Björn I didn't know about this file, but it seems really useful for what
I'm willing to do. I don't totally understand what I should put in it yet,
but I'm
Thanks John,
For now I am setting both the value and default_value tags, e.g.
https://github.com/peterjc/galaxy_blast/blob/master/tools/blastxml_to_top_descr/blastxml_to_top_descr.xml
However, in usability testing I have found a related problem/issue.
In this tool I ask for several columns,
python scripts/set_dataset_sizes.py
Loading Galaxy model...
Processing 134520 datasets...
Completed 0%
Traceback (most recent call last):
File scripts/set_dataset_sizes.py, line 43, in module
dataset.set_total_size()
File lib/galaxy/model/__init__.py, line 1257, in set_total_size
if
Hmm So my understanding of the way Galaxy sort of iteratively
builds up tool parameters is that each time there is a state update it
validates all of the old state (this is where the red errors come
from) and then generates the new state - but it never validates the
new state before
Hi,
when a new user creates a new account they only need an email address and
password. This can be quite tricky to identify the user/demographics etc at a
alter point. Is there a form that a user may complete where he could add
optional data such as name, institution, address etc ? There
