[galaxy-dev] EBI SRA for local galaxy

2013-03-25 Thread Sergei Manakov
Hello, There is a tool called EBI SRA on public galaxy https://main.g2.bx.psu.edu/ I was wondering if there is a way to add it to my local instance of galaxy. I tried searching through the tool shed http://toolshed.g2.bx.psu.edu/ but I didn't find anything thanks, Sergei -- Sergei (Siarhei

[galaxy-dev] Files uploaded via FTP

2012-05-24 Thread Sergei Manakov
Hello, There is an option of FTP upload on public galaxy, but my local galaxy lacks this capability. Is there a way to configure FTP upload for local galaxy? thanks, Sergei -- Sergei (Siarhei Manakou) Manakov California Institute of Technology +1 626 395 3593

Re: [galaxy-dev] how to get macs not macs14 for Galaxy

2012-05-01 Thread Sergei Manakov
Blankenberg d...@bx.psu.edu wrote: Hi Sergei, The current MACS tool that comes with Galaxy uses MACS 1.3.7.1 from http://liulab.dfci.harvard.edu/MACS/Download.html. Thanks for using Galaxy, Dan On Mar 28, 2012, at 6:38 PM, Sergei Manakov wrote: Hello, I am trying to set up MACS

Re: [galaxy-dev] how to get macs not macs14 for Galaxy

2012-05-01 Thread Sergei Manakov
sorry, I meant is NOW trying to call the correct executable, but I still get the error. thanks, S. On 1 May 2012 14:51, Sergei Manakov siarheimana...@gmail.com wrote: hi Dan, Thanks for your replay. I have now installed MACS 1.3.7.1, so the script macs_wrapper.py is not trying to call