Hello: I am trying to configure Galaxy to submit jobs to a remote cluster (specifically, an XSEDE resource to which I don't have administrative access). I'm familiar with LWR and have read another response about configuring the Galaxy host as a PBS submit host. What is the best approach to accomplish what I'm after?
I have experimented with the cli job runner with the SecureShell and Torque plugins. With some minimal modifications, I can run jobs via this mechanism, but file staging fails. I haven't looked into the details of the staging failure yet. Is this a viable approach? Is the cli job runner supported? (the universe_wsgi.ini file says available job runners include pbs and drmaa) I've found a similar question on the galaxy-dev mailing list, with mention of some relevant recent work: http://dev.list.galaxyproject.org/Remote-Job-Submission-from-Local-Install-td4655144.html What is the status of the work referenced in that post? Thanks, Tom Uram
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