Re: [galaxy-dev] FastQC Tool Errors

2012-06-26 Thread simon andrews
EDT 2012, Simon Andrews simon.andr...@babraham.ac.uk mailto:galaxy-dev%40lists.bx.psu.edu?Subject=Re%3A%20%5Bgalaxy-dev%5D%20FastQC%20Tool%20ErrorsIn-Reply-To=%3CD9909700-8628-4478-814C-449803EE45F1%40babraham.ac.uk%3E wrote: Are you by any chance running an older version of gcj as your java

Re: [galaxy-dev] FastQC Tool Errors

2012-06-25 Thread simon andrews
Are you by any chance running an older version of gcj as your java version? There is a known bug in some of these where they don't correctly configure the headless environment, even if the correct parameters are passed. This causes exactly the kind of errors you're seeing. If this is the