Okay, so I'm caught up on my Galaxy Dev reading, and now realize that the thread on calling workflows programmatically is discussing what I need to do.
I would still be curious to know if something is planned for the Galaxy workflow interface, that would allow you go configure a workflow to take multiple inputs, run the workflow for each of these inputs, and then allow me to pass the end result of the workflows to a single "merging" or "aggregating" tool. However, in the meantime, I'm going to try the api interface to workflows and see if that means my near term needs. Thanks, Dave On 3/18/11 11:23 AM, "Dave Walton" <dave.wal...@jax.org> wrote: > I'm curious if there is a way to create a workflow as follows (or if anyone > else thinks this is a good idea, or for that matter has a good suggestion of > another solution): > > 1) User selects N groomed fastq files and puts them in a history > > 2) User selects a workflow that allows them to select the N files, and then > passes each of them to a two step process that first runs them through > tophat, and the resulting bam file through cufflinks. > > 3) At the other end of the workflow would be a merge module that would take > one of the 3 output files from cufflinks from each run, and does some sort > of aggregation or transformation step on all the resulting data. > > Any input would be greatly appreciated. > > Thanks, > > Dave > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
