On Dec 9, 2011, at 4:34 PM, Josh Nielsen wrote:
Hello,
I have a question which I have not seen specifically addressed in the online
Galaxy wiki documentation about how to integrate tools (dependencies) into
Galaxy. I have implemented a locally managed instance of Galaxy that my
business
Thanks Nate! Updated documentation is always welcome and useful. I
appreciate the clarifications.
-J
On Mon, Dec 12, 2011 at 10:18 AM, Nate Coraor n...@bx.psu.edu wrote:
On Dec 9, 2011, at 4:34 PM, Josh Nielsen wrote:
Hello,
I have a question which I have not seen specifically addressed
Thanks Jeremy,
That does clear quite a few things up. I will probably take the route of
just adding the directories that contain the tool executables to my path.
And I guess I'll just pay attention to which tools are Java based and copy
the executables under the jars directory. Thanks for looking
Hello,
I have a question which I have not seen specifically addressed in the
online Galaxy wiki documentation about how to integrate tools
(dependencies) into Galaxy. I have implemented a locally managed instance
of Galaxy that my business is using with our cluster and now have a freshly
Josh,
It appears that there are shell directories for the tools under
~/galaxy-dist/tools/ with basic wrapper scripts but without the corresponding
executables (very few that I've noticed have the tools already in them). Is
the intent to download the dependency tools and (building from
