Re: [galaxy-dev] Problem referencing EMBOSS tools in universe_wsgi.ini

2013-02-06 Thread Guest, Simon
Hi Simon, Significant changes to the way that job run parameters are defined will be included in a future release. In specific, there'll be no more job runner URLs, and parameters will be specified with a more robust XML language. These changes aren't stable enough to go out in the next

Re: [galaxy-dev] Problem referencing EMBOSS tools in universe_wsgi.ini

2013-02-05 Thread Nate Coraor
On Jan 29, 2013, at 3:59 PM, Guest, Simon wrote: We have set up our local Galaxy installation to submit jobs by default through HTCondor, using the drmaa tool runner. We override this on a tool-by-tool basis in universe_wsgi.ini, to specify certain tools we always want to run locally.

[galaxy-dev] Problem referencing EMBOSS tools in universe_wsgi.ini

2013-01-29 Thread Guest, Simon
We have set up our local Galaxy installation to submit jobs by default through HTCondor, using the drmaa tool runner. We override this on a tool-by-tool basis in universe_wsgi.ini, to specify certain tools we always want to run locally. The problem is that EMBOSS tools have a tool id like