This page of the tool shed wiki has most of the details. The tool dependency
tag definitions are evolving rapidly as more tools are being included in the
Galaxy tool migration process. I'm trying to keep information updated, but at
times the wiki page will lag due to resource deficiencies.
Hi list,
I got the following tool_dependencies.xml file failing:
?xml version=1.0?
tool_dependency
package name=bedtools version=2.17.0
install version=1.0
actions
action type=download_by_url target_filename=bedtools-2.17.0.tar.
gz
Franco,
BEDTools, unlike some other packages, does not require the 'make clean'
shell command to compile. If you remove that line, the dependency should
install without problems.
--Dave B.
On 2012-12-11 21:16, Franco Caramia wrote:
Hi list,
I got the following tool_dependencies.xml file
Franco,
You're right, I see a both clean and all rules in the makefile. It looks
almost like it's not finding the expected makefile, I'll have to look
into that in the morning. As for the download_by_url action, it
downloads and extracts the specified file, then changes to the extracted
