Re: [galaxy-dev] Updated Freebayes Wrapper - Bugs

2014-07-16 Thread Nicola Soranzo
Il 2014-06-30 18:40 Anton Nekrutenko ha scritto: Lance: Here is github URL: https://github.com/nekrut/freebayes [3] On Wed, Jun 25, 2014 at 2:40 PM, Lance Parsons lpars...@princeton.edu [4] wrote: Thanks for the major update of the Freebayes wrapper, excellent! I've run into two issues,

Re: [galaxy-dev] Updated Freebayes Wrapper - Bugs

2014-06-30 Thread Anton Nekrutenko
Lance: Here is github URL: https://github.com/nekrut/freebayes On Wed, Jun 25, 2014 at 2:40 PM, Lance Parsons lpars...@princeton.edu wrote: Thanks for the major update of the Freebayes wrapper, excellent! I've run into two issues, however. 1) When using set allelic scope I get the

[galaxy-dev] Updated Freebayes Wrapper - Bugs

2014-06-25 Thread Lance Parsons
Thanks for the major update of the Freebayes wrapper, excellent! I've run into two issues, however. 1) When using set allelic scope I get the following error: Fatal error: Exit code 1 () freebayes: unrecognized option `--min-repeat-length' did you mean --min-repeat-size ? 2) When using a vcf