Re: [galaxy-dev] Urgent help needed

2011-12-06 Thread Dannon Baker
2:41 PM To: Toqa Manasrah Subject: Re: [galaxy-dev] Urgent help needed Sure. See the link in my previous email (http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax) and look for the data section for an explanation of the attributes available to you. For an example of a tool

[galaxy-dev] Urgent help needed

2011-12-05 Thread Toqa Manasrah
Hi Everybody, I am running a tool which is not defining the output file name as parameter. the tool is running and I can see the output file in the history directory but not in the history frame. how could I solve the problem? I should see and download the output file from the history but I see

Re: [galaxy-dev] Urgent help needed

2011-12-05 Thread Dannon Baker
Toqa, Just to make sure I've understood your question: the problem is that a tool that you're trying to wrap doesn't provide a way to specify a particular output filename? Take a look at the from_work_dir attribute of a data element. Or are you asking how to define outputs in general? For