Re: [galaxy-dev] WARNING:galaxy.datatypes.registry:Overriding conflicting datatype

2014-02-14 Thread Greg Von Kuster
I've gone ahead and made the change in the datatypes registry to use log.debu instead of log.warning, so hopefully this issue is resolved. The changeset in central is 12497:0b0018fa5d20, which has also be grafted to stable. Greg Von Kuster On Feb 13, 2014, at 11:51 AM, Jim Johnson

[galaxy-dev] WARNING:galaxy.datatypes.registry:Overriding conflicting datatype

2014-02-13 Thread Jim Johnson
I now have 2 versions of snpeff installed from the toolshed on my galaxy server. Each snpeff version includes an identical datatypes_conf.xml The galaxy server is setting metadata externally. When any job runs, (in may case I was running a picard tool), the following message is written to the

Re: [galaxy-dev] WARNING:galaxy.datatypes.registry:Overriding conflicting datatype

2014-02-13 Thread Jim Johnson
On 2/13/14, 10:22 AM, Greg Von Kuster wrote: Hi JJ, On Feb 13, 2014, at 11:00 AM, Jim Johnson johns...@umn.edu wrote: I now have 2 versions of snpeff installed from the toolshed on my galaxy server. Each snpeff version includes an identical datatypes_conf.xml The galaxy server is setting