Many thanks for the links, exectly what I need! (somehow missed to look
in the right place, obviously ...)
Best
// Samuel
On 11/14/2012 04:02 PM, Hans-Rudolf Hotz wrote:
Hi Samuel
Have you looked at Data Libraries ?
(http://wiki.galaxyproject.org/Admin/Data%20Libraries/Libraries )
also look
Hi,
We are looking into ways to integrate galaxy into the workflows of users
at our cluster, with lots of NGS users running all and any kind of
analyses on their typically huge amounts of data. For this we use a
parallel file system, available on all compute nodes.
This file system,
This may be implemented, I believe some people run Galaxy on the cluster,
but if not:
Galaxy normally operates on files stored in the database/files folder. If
your Galaxy instance has access to the files you need on your parallel fs,
I guess you could start by writing a tool that creates links
Hi Jorrit, thanks for the input!
On 11/14/2012 03:12 PM, Jorrit Boekel wrote:
This may be implemented, I believe some people run Galaxy on the cluster,
Yes, but AFAIK, most cluster job runners use some kind of file staging
(copying) into local storage on the compute nodes OR, require you do
Hi Samuel
Have you looked at Data Libraries ?
(http://wiki.galaxyproject.org/Admin/Data%20Libraries/Libraries )
also look at the configurations in universe_wsgi.ini:
library_import_dir
user_library_import_dir
allow_library_path_paste
which gives you many option to access data out side of the
