I am testing the latest galaxy central distribution by running FASTQC. It
creates a directory call dataset_*_file in the job_working_directory and then
copies that directory to file_path when the job is complete. Is that on purpose
or is that a bug?
Thanks,
Ilya
Ilya Chorny Ph.D.
It's a feature although arguably necessitated by what some might
consider a design bug in FastQC
FastQC insists on writing the html report with links to the generated
images which it writes to a subdirectory. That won't work for Galaxy's
html datatype, so the wrapper script unpacks that structure
Thanks, that makes sense.
Ilya
-Original Message-
From: Ross [mailto:ross.laza...@gmail.com]
Sent: Thursday, July 28, 2011 10:14 PM
To: Chorny, Ilya
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] dataset_*_file directory being compied to file_path
when running fastqc
It's
