Hi,
There is a missing parameter in the unified genotyer config from the iuc
gatk2 wrapper:
The following line should be added around line 204 (just before
/expand/inputs):
param name=sample_ploidy type=integer value=2 label=Sample
Ploidy (number of allles). For tumour, set to 2x the
Hi Geert,
thanks for the bug report, I've fixed the bug upstream:
https://github.com/bgruening/galaxytools/commit/cab6d1e84d440b7c73e99adc2bcb2c3c64c5b2c5
Björn, can you release an update on the Tool Shed? I think we have
accumulated a lot of fixes for GATK2 wrappers already.
Nicola
Il
