[galaxy-dev] installing htseq-count from tool-shed

2014-06-10 Thread Karen Chait
Hi, I am trying to install the tool htseq-count from the tool-shed. I had a problem in the first installation so I uninstalled the tool and all its dependencies (numpy, samtools 0.1.19 and pysam) from the 'manage installed tool shed repositories) and installed it again but then I get installation

Re: [galaxy-dev] installing htseq-count from tool-shed

2014-06-10 Thread Lance Parsons
Hi Karen, Sorry your having trouble with installing the tool. It seems that the somehow, the numpy dependency didn't install properly or isn't being found during the HTSeq install. Is there any other info in the log to indicate an issue with installing Numpy? Also, what OS are you running