Re: [galaxy-dev] shall us specify which tool run in cluster?

2013-08-02 Thread Thon de Boer
HI Shenwiyn, The definition of regularjobs etc. is there to allow each job to be run under different environment on the cluster. I am actually not using most of those definitions, except for the BWA tool, which I want to run using 4 slots on our cluster so I use the destination

[galaxy-dev] shall us specify which tool run in cluster?

2013-07-31 Thread shenwiyn
Hi Thon Deboer , I am a newer in Galaxy.I installed my Galaxy with Torque2.5.0 ,and Galaxy uses the pbs_modoule to interface with TORQUE.But I have some question of the job_conf.xml : 1.)In your job_conf.xml ,you use regularjobs,longjobs,shortjobs...to run different jobs ,how our Galaxy know

Re: [galaxy-dev] shall us specify which tool run in cluster?

2013-07-31 Thread Ido Tamir
On Jul 31, 2013, at 8:52 AM, shenwiyn shenw...@gmail.com wrote: Hi Thon Deboer , I am a newer in Galaxy.I installed my Galaxy with Torque2.5.0 ,and Galaxy uses the pbs_modoule to interface with TORQUE.But I have some question of the job_conf.xml : 1.)In your job_conf.xml ,you use

[galaxy-dev] shall us specify which tool run in cluster?

2013-07-26 Thread shenwiyn
Hi Thon Deboer , I am a newer in Galaxy.I installed my Galaxy with Torque2.5.0 ,and Galaxy uses the pbs_modoule to interface with TORQUE.But I have some question of the job_conf.xml : 1.)In your job_conf.xml ,you use regularjobs,longjobs,shortjobs...to run different jobs ,how our Galaxy know