Re: [galaxy-dev] bowtie2 toolshed installation

2014-01-31 Thread bjoern.gruen...@googlemail.com
Hi Alex, there is a difference in http://toolshed.g2.bx.psu.edu/view/devteam/package_bowtie2_2_1_0 and http://toolshed.g2.bx.psu.edu/view/devteam/bowtie_wrappers The package_* is installing the binary for you and can be used by other programs as well. bowtie_wrappers contains the actual wrappers

Re: [galaxy-dev] bowtie2 toolshed installation

2014-01-31 Thread Alexander Kurze
Thanks for your quick answers. I actually have installed the dependencies first and then I have tried to add bowtie2 http://toolshed.g2.bx.psu.edu/view/devteam/bowtie2. But this is where the problem lies: I get following error message: Server Error An error occurred. See the error logs for more

Re: [galaxy-dev] bowtie2 toolshed installation

2014-01-31 Thread Dave Bouvier
Alex, To help determine the cause of this, could you paste the output of the following commands run from the root of your Galaxy installation? hg heads hg id --Dave B. On 01/31/2014 09:05 AM, Alexander Kurze wrote: Thanks for your quick answers. I actually have installed the

Re: [galaxy-dev] bowtie2 toolshed installation

2014-01-31 Thread Alexander Kurze
Here we go changeset: 8796:961ae35ba612 branch: stable tag: tip parent: 8794:1c7174911392 user:Nate Coraor n...@bx.psu.edu date:Fri Feb 08 11:23:04 2013 -0500 summary: Added tag release_2013.02.08 for changeset 1c7174911392 changeset: 8795:9fd7fe0c5712

Re: [galaxy-dev] bowtie2 toolshed installation

2014-01-31 Thread Dave Bouvier
Alex, It is likely that the error you're encountering may have been resolved in the current stable branch. A description of the steps required to update your installation can be found on the following page: https://wiki.galaxyproject.org/Admin/GetGalaxy#Keep_your_code_up_to_date Be advised